Gene detail information of Glyur000172s00014892 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46170.1 | 1.00E-76 | Reticulon family protein |
| NR | XP_004510697.1 | 1.12E-143 | PREDICTED: reticulon-like protein B1-like [Cicer arietinum] |
| Swissprot | tr|Q9SUR3|RTNLA_ARATH | 8.00E-111 | Reticulon-like protein B1 |
| trEMBL | tr|C6TIC4|C6TIC4_SOYBN | 4.00E-140 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 106883 | 109010 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014892.1 | PF02453.12 | Reticulon | 68 | 229 | 2.30E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 97.300 |
| SRR1783600 | control | 98.362 |
| SRR1783602 | moderate drought stress | 76.669 |
| SRR1811619 | moderate drought stress | 76.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 108.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 108.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 128.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 125.071 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.973 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.025 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.779 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 207.080 |
| SRR2868004 | Drought Stress (root) | 129.444 |
| SRR2967015 | Control (root) | 157.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.147 |
| SRR9715740 | Leaf | 42.223 |
| SRR9715741 | Leaf | 41.855 |
| SRR9715739 | Root | 236.777 |
| SRR9715742 | Root | 165.958 |
| SRR9715743 | Root | 181.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 76.278 |
| SRR8749028 | MeJA induced 9h | 47.962 |
| SRR8749029 | MeJA induced 9h | 51.983 |
| SRR8749030 | Uninduced | 8.021 |
| SRR8749031 | Uninduced | 3.857 |
| SRR8749032 | Uninduced | 10.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 203.693 |
| SRR8400027 | Control - Root | 209.032 |