Gene detail information of Glyur000172s00014886 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46150.1 | 6.00E-31 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KEH18783.1 | 5.27E-74 | late embryogenesis abundant protein [Medicago truncatula] |
| trEMBL | tr|A0A072TPL5|A0A072TPL5_MEDTR | 2.00E-74 | Late embryogenesis abundant protein {ECO:0000313|EMBL:KEH18783.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 86912 | 87583 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014886.1 | PF03168.8 | LEA_2 | 103 | 202 | 3.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.919 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.063 |
| SRR2868004 | Drought Stress (root) | 0.396 |
| SRR2967015 | Control (root) | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.144 |
| SRR9715740 | Leaf | 19.069 |
| SRR9715741 | Leaf | 19.161 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.542 |
| SRR9715743 | Root | 2.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.807 |
| SRR8749028 | MeJA induced 9h | 7.942 |
| SRR8749029 | MeJA induced 9h | 10.205 |
| SRR8749030 | Uninduced | 5.032 |
| SRR8749031 | Uninduced | 1.965 |
| SRR8749032 | Uninduced | 6.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.120 |
| SRR8400027 | Control - Root | 0.282 |