Gene detail

Gene detail information of Glyur000172s00014882

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46100.1	2.00E-66	Nuclear transport factor 2 (NTF2) family protein
NR	XP_006598925.1	2.09E-125	PREDICTED: uncharacterized protein LOC100801965 isoform X2 [Glycine max]
trEMBL	tr\|I1MKQ9\|I1MKQ9_SOYBN	8.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G03450.3}

Sequence

Transcript Sequence

>Glyur000172s00014882.1
ATGGCATTGGCTGCTATTGCTTCCTTTGCTTCAATCAGCAATACTCACCACCACCACAGTTCTTTGGTGTTTCTACCGAAACACCACCACCACCACGTTCACACTCACACCAGAAGAATCCATAGGTTTCGATGCAGTACTGGAACAAACCCGAATCAAGAGTCCCAACCCACCACCCAGAAGAGCAATCCACTTCTCAAGCTCGCGTGGTATAGTTCTGAGCTTCTCGGCATTGCTGCCTCTGTTTTCCGTTCCCCTTCTGCTGAAGAAGAAGCTCCTCCTCCTCAGAGGCTTCTTCAGACTACTGATCGTGCCGCGGTTGTGGACACTATCAAACAAGACTTCGAAAGATCGTATTTTGTCACAGGCTCCTTTAAAGGGCTTCAGCGTTTCAAAAGGAACTGCNCTAATTTTGGATCCCTCCTGGAGAAGTCTAATATGAAGCTTATGAAGTGGGAAGATTTTGAGGGTAAAGGAATTGGCCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATGCACAATCCGGAAAAGTATGCAGGCATGTGGAGCACTGGAATGTTCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCCGGGGATTTGGCTTGAAAGATTATGCGGGTAGGTTGTTGAAAGCTGTCCAGGTGAAGCGTTAAATAACAACCATTTTGAGACAGTGCCAAGATTTCAATATAGACACCGACGTAACTTCAAAATTGGATGCTTAATAATGCAACCTTGATGAAGAAGATCTCGTGCTGCAAGTTACTTGGACGGATTGGAAGCCACTAAGATTAGGCTGGTGGTGAAGGGTTTGGATAATTTGCACACGGTTATAAATTCAAACCTTGTTATTGCCATTGAACATAAAAAAAAAAAGGGATCAATTTAGATATTCTTTGCATTATTGGTATGAACTAATNTTAGGTAGGAGCTCATGACGGTGTAGGAATCTCCTGTAAATATATATACACATCTTTTTCTTTTCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	69904	72985	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014882.1	PF10184.4	DUF2358	124	197	3.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.896
SRR1783600	control	0.961
SRR1783602	moderate drought stress	0.597
SRR1811619	moderate drought stress	0.583

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.959
DRR006520	Root Summer glycyrrhizin high producing strain	0.842
DRR006521	Root Winter glycyrrhizin high producing strain	2.287
DRR006522	Root Winter glycyrrhizin high producing strain	2.163
DRR006523	Root Summer glycyrrhizin low producing strain	0.757
DRR006524	Root Summer glycyrrhizin low producing strain	0.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.326
SRR2868004	Drought Stress (root)	0.879
SRR2967015	Control (root)	0.416

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.157
SRR9715740	Leaf	21.861
SRR9715741	Leaf	16.775
SRR9715739	Root	0.673
SRR9715742	Root	0.470
SRR9715743	Root	0.541

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.680
SRR8749028	MeJA induced 9h	0.824
SRR8749029	MeJA induced 9h	0.540
SRR8749030	Uninduced	0.375
SRR8749031	Uninduced	0.141
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.607
SRR8400027	Control - Root	3.763