Gene detail

Gene detail information of Glyur000172s00014881.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46110.1	2.00E-145	ketopantoate hydroxymethyltransferase 1
NR	XP_003622496.1	0	3-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula]
COG	YP_003552958.1	8.00E-89	3-methyl-2-oxobutanoate hydroxymethyltransferase [Aminobacterium colombiense DSM 12261]
Swissprot	tr\|O82357\|PANB1_ARATH	0	3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A072TNM1\|A0A072TNM1_MEDTR	0	3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000313\|EMBL:KEH18796.1}

Sequence

Transcript Sequence

>Glyur000172s00014881.1
AAGTGAAAACGAAATGGTCATGATATCACACAGAATGGGAAGTAGTTGAGTCTCAACTTTGTCACCNCCTCGCGAACCTTTACCTTCTCCCTCTCGAGTGAGTCCTGTCTTAGGCAGCATCGGAATGGCGTCACTGAGGTCTATTCTGAGAGCAACAACCCTTCGTTCCTCTCTTCTGAGGCACTTGAGCAACGTCCCCGAGAACACCGTGTACTCGGGACCCAACCCTCAGAATCCGAACAAGAGGGTGACACTGGCCCACCTGAGGCAGAAGCACCGAAACTCCCAACCCATCACCGTCGTCACCGCCTACGACTACCCTTCNGCCGTGCACCTTGACATGGCCGCCGTCGACGTCTGCCTCGTCGGAGACTCTGCCTCCATGGTGGTTCACGGCCACGACACCACCCTACCCATCACGCTCGATGAGATGCTCGTCCACTGCCGTGCCGTCGCGCGTGGCGCTCAAACGCCTCTTCTTGTTGGCGACTTGCCCTTTGGAACCTACGAATGCAGTTNCAACCAGGCAGTGGATGCAGCGGTTCGGATTTTGAAAGAAGGGGGAATGGATGCCATAAAATTGGAAGGAGGGTCCCCTTCAAGAATCGTTGCAGCAAAATCTATTGTTGAGGCTGGAATAGCTGTGATGGGGCATGTTGGGCTTACTCCTCAGGCCATTAGTGTTTTAGGGGGATTTAGACCACAGGGAAGGAATGTTGCTAGTGCTGTCAAGGTTNTAGAGACAGCATTGGCTTTGCAAGAGGCAGGGTGCTTTGCTGTTGTTCTAGAATGTGTGCCTGCACCAGTGGCTGCCGCAGCAACAGCAGCTCTTCAAATCCCTACGATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAGGTGCTTGTTTACCATGATCTTCTTGGTATGCTACAACACCCCCACCATGCAAAGGTCACTCCAAAATTTTGTAAACAGTATGCTCGTGTTGGAGATGTCATCAATAAAGCCTTACTGGAGTACAAGGAAGATGTGACAAATGGTTCATTTCCTGATGCTCACCATAGCCCATATAAAATCAGTGAAACCGAAGCTAATAGTTTCTTAAATGAGCTGCAAAGGTTAGGTTTGGACAATGCAGCATCTGCGGCATCCGAAGCAGTTCAGAAGATGGTTGCAGCCAAATCAATTGACGGAGGAAACTCAACAAAGTAACAATTTAGTAAAGCTACAGTATTGTCCTTCCTTTTTTCATTTGATGTACTTCATCTCCTTCAGTGGCAGAATAAATTGAAGGGACATAATAATCGAACAGAAGTCAAGCAGTTGACACATAGAAAGATGCCATTTTCTTAGGGCAGATAGCATCAATTGCTCATCTTGTTTTCCCCCCTTCACCTTTTGATCAGCAAGATCAAATGCATGGAATTTTCTTCATATGTTACTTTGAAACAATTTTTTGTCATCCCACATCATATATAGAGCCTCCAGAAAACCTATAAGGCAATATCACCAAAAGAAATCCTGTTTTGAAGCATTGTAGCACAGCAAAATGTTGAAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	65696	68449	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00606	panB	EC:2.1.2.11	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0015940 pantothenate biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014881.1	PF02548.10	Pantoate_transf	40	305	2.40E-102

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.350
SRR1783600	control	20.415
SRR1783602	moderate drought stress	23.684
SRR1811619	moderate drought stress	23.626

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.255
DRR006520	Root Summer glycyrrhizin high producing strain	20.260
DRR006521	Root Winter glycyrrhizin high producing strain	9.029
DRR006522	Root Winter glycyrrhizin high producing strain	8.947
DRR006523	Root Summer glycyrrhizin low producing strain	17.008
DRR006524	Root Summer glycyrrhizin low producing strain	17.047
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.434
SRR2868004	Drought Stress (root)	19.186
SRR2967015	Control (root)	15.892

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.691
SRR9715740	Leaf	11.190
SRR9715741	Leaf	8.821
SRR9715739	Root	10.878
SRR9715742	Root	10.411
SRR9715743	Root	9.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.553
SRR8749028	MeJA induced 9h	9.704
SRR8749029	MeJA induced 9h	10.974
SRR8749030	Uninduced	7.380
SRR8749031	Uninduced	5.657
SRR8749032	Uninduced	6.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.516
SRR8400027	Control - Root	12.345