Gene detail

Gene detail information of Glyur000172s00014880

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01250.1	4.00E-57	WRKY family transcription factor
NR	XP_003548638.1	1.19E-125	PREDICTED: WRKY transcription factor 22 [Glycine max]
Swissprot	tr\|O04609\|WRK22_ARATH	1.00E-77	WRKY transcription factor 22
trEMBL	tr\|I1MKR8\|I1MKR8_SOYBN	4.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G03570.1}

Sequence

Transcript Sequence

>Glyur000172s00014880.1
GAGAGAGAGAGATTTGTTTGTTTCTCGCAGTAGACTTTGTGAAACATCCACTTTCTCTCTATCTATATATGCTTGTCTTTTCCTACTTCTCTCACCTTATCATCTCTCTCTCTCTCTCTCTCTCCACAAAAAGTCAGCGCCTTCTTTTGTCCCTCTCTCTCGGAGAAGCAGAGGGAACAGAACAGAACAGAACAGAGTCACAGACACATTTTCTGAGCTTTGTCTCTACGGTTATGGAGGACGATTGGGATCTACACGCTGTGGTCAGAGGCTGCACCATGCTNACCTCTTCTTCTTCCTCCTCCTCCTCATCCACCACCACCACTACTGCTACTGCCTCATCTGTATCTTCTTCTGGTTTTGGGACTTGTTACCAACAACAACCTTCATCAGCTTCTTCTTACAGCTCCTTCTCTATTTTCCCTGCAGAACAAACGGGTCAAATTTTGTCCCTTTCAAACCCTCCTTTTGAGGCAGCAAGGGGTNCTTCCATTGAAGAATTGCATGAGCTTTGCAAGCCTTTCTTCCTCAANTCACACCCTCCCTCCTTGCACACCTCTTCTTCTTCCTTCTCTTATAATATTTCCTCTGCACCCAAATCACCTCACACACAGCAAAAACAACAGCACCCAAATAAACAGTCTCACCATGCCGGTTCTGCCACCACCCCACGATCTAAAAGAAGGAAGAACCAGGTTAAGAAGGTTTGTCAAGTGACAGCTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGNCAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGGTGCTTAGCAAGGAAACAAGTGGAGAGGAACAAATCAGACCCAACAATGTTCATAGTAACCTACACTGGGGAACATAGCCACCCTGCTCCCACACATCGAAATTCCCTTGCTGGTTCCACACGCCAGAAGCCATTAACCCCTCAAACTGTCACTGATGGAGACGACTCTGGCAATAAATCACTAACAATTACAAAACCAGTTTCTCCTTCAACCTCAGGTGCTGAAGAGGAAGAGGTGGTTGCACCCCTGAGTGCAAAGTCAGAAAGTATAGAGGACATGGAAGATTTGATGAATGATGATGATGATGAGGAAGAAGAAAATGAATTTGGGTCATCAGATAATATGGTGGTAACAGATGATTTCTTTGAAGGTTTAGATGAACTCACAGGGTTTGCTACAGCAGCTACTGGAGACTGTTTTTGCTGACCCTTTTGCATAGTGCTGCCACTGCTGGTGGTGGTAGCTGACTCATTGGTTTCATGCCTTTTCATTACAGAGAATAGGAACTCTTTGTTTTTTAGTTTTTTTGGGTCTTGTTTTTTTGGGTTAGAGGAATTGGTACATTTTGGAGGAATCTTAACTAACAATGCTTTGTGAAGGGGAAGAAAAGTTCTCCCCAAAGTATATAGTGATAATGTAGATTAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	61734	63591	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014880.1	PF03106.10	WRKY	223	281	1.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.012
SRR1783600	control	0.977
SRR1783602	moderate drought stress	0.896
SRR1811619	moderate drought stress	0.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.103
DRR006520	Root Summer glycyrrhizin high producing strain	5.005
DRR006521	Root Winter glycyrrhizin high producing strain	8.868
DRR006522	Root Winter glycyrrhizin high producing strain	8.408
DRR006523	Root Summer glycyrrhizin low producing strain	2.044
DRR006524	Root Summer glycyrrhizin low producing strain	2.193
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.314
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.376

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.343
SRR2868004	Drought Stress (root)	24.437
SRR2967015	Control (root)	53.347

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.903
SRR9715740	Leaf	1.116
SRR9715741	Leaf	0.956
SRR9715739	Root	2.076
SRR9715742	Root	8.471
SRR9715743	Root	6.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.882
SRR8749028	MeJA induced 9h	68.904
SRR8749029	MeJA induced 9h	16.343
SRR8749030	Uninduced	11.351
SRR8749031	Uninduced	12.121
SRR8749032	Uninduced	6.852

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.270
SRR8400027	Control - Root	8.741