Gene detail

Gene detail information of Glyur000172s00014879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01270.1	2.00E-88	RING/U-box superfamily protein
NR	XP_004510690.1	0	PREDICTED: intracellular protein transport protein USO1-like [Cicer arietinum]
trEMBL	tr\|K7MEZ9\|K7MEZ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G03580.2}

Sequence

Transcript Sequence

>Glyur000172s00014879.1
ATGGTGGACGTTGGCGAATTCGCCGGCACCATTTGTTCGATCTGCTACGAAAATCTCAAGCCTATTGCCGAAGACCTTCAATCCATCTCCATCTGCGGTCACCAATGGTTCGAGTACTGTTCGAGATCGAAGAAGCATACTTGCCCCGTTTGCAAGCAGGGTTGCAGGTCAAGCGACGCATGCAGGCTTTATTTTCAATCGGTTGGTGGAGACGTGGGCGACGCTGTTCTCTCTCAGAAGCACGTTGATCTTGAGGAAGATGCTGTGGTTCTGCGTGGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAGTTCCGTGTTGGAACGGAAAACAAAGGAGTTAGAAGAACTTAATGAGGAGCTTTGTTCTTGCAAGGAGCAGGCAAAGACAGAAATAGCATTAAAGAATGAAGCCATGAATCAAAAAGCATCCATACAATTCCAGCTTCGTATGAAATCAGAGGAGCTTGAGAAGTCAAGTTTGGAGTGTTTTAGATTACAAGACAGAAACATGGCTTTGGCCAAAGAACTTGCAGCATTGAAATTAGTGTCTGATCTACACCTTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAGTGGAGCCAACAGCAAAGAAACAATAGACACATTGAAAAGATCCCTTGTCCTGCGGAACAAGAGTTACAAAGAATTAATGGCCAAGTGCAATCTTCTGGGGAGAGGTGAGGCTCGTTATAGTAAAAAGCTTGACAAGGCTAAAGAGAAGATAAATAAACTGAAGGTGAGGGTACAAGAATTGGAAACAGCAGCTGAAGTAAAAGAGAACGAATATTTGATGTCTCTGAAAGGTTCAAAGAAACTTGAAAATAGCACCAATTCTAATTCTGAAGTACTGACAGCTACCAAATTTTCTTCAAAAGAGAAAAGCAAACAAAATTCGACACCAAAATCCGTGATAGATCTGACTGCGAATGACAACAGTAAATCTATACAATCTTTGAAGATAGAGAACACCGAAGCTATTAAAAATAAGGCTGTGAATATTAGCAATGGAAGTAAAGCTACCTTGTCTCTTGATAAAGAGAGAGAGTGTATCTTTGTCGATGAAGATGATTCTGAATTTAGTACTAAAGCTTTACCAGGACATCCAAAACAAGACTACAAAGATCAAGACAGGGATGATCTAGCAAAGCCAGAAGCAGCAGCACCTGGCACTAAGACTGAAACATCATTGCAAGGAAAATGTAATATGGCTGAGTCTTCAAGAGTTGATATTGACACTGAAATGGCTGACATTTGTGCTGGCAATGTGGATGAAGAGGTGACACTACAAGCCAATGTTAAACAAGTTCAACCCATGGTTAACATTAGAAAGGAGTCACCATTAACAAATTCAAATTCAGTGGACATCTGCTTTACTGGTGGATTACTTGGTCCTGATGGAACTCAACGATACTTGGGTAGATGGTGCAAGCGTGGACAAAATAGTGAATCAACATCTACAAAAGGTTCGAGTAATGGGAATTTGATAGCTGTCGGAGCTGATGGTAGAGGTGGCAGGATTAAAGTTCTAAGGAATCCAAGCCAAAGCTTCTCGGATGGCAAGGAAAATTCACCAAGTTCAAAAAGGCTTAAATTTGGATCTAAAACAAGTGGTTTGCAATCCCAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGGGTCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	48422	52276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.502
SRR1783600	control	0.488
SRR1783602	moderate drought stress	0.422
SRR1811619	moderate drought stress	0.347

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.022
DRR006520	Root Summer glycyrrhizin high producing strain	1.003
DRR006521	Root Winter glycyrrhizin high producing strain	1.318
DRR006522	Root Winter glycyrrhizin high producing strain	1.280
DRR006523	Root Summer glycyrrhizin low producing strain	0.497
DRR006524	Root Summer glycyrrhizin low producing strain	0.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.983
SRR2868004	Drought Stress (root)	2.910
SRR2967015	Control (root)	2.204

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.683
SRR9715740	Leaf	0.161
SRR9715741	Leaf	0.327
SRR9715739	Root	0.190
SRR9715742	Root	0.143
SRR9715743	Root	0.161

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.580
SRR8749028	MeJA induced 9h	3.931
SRR8749029	MeJA induced 9h	2.173
SRR8749030	Uninduced	0.838
SRR8749031	Uninduced	0.978
SRR8749032	Uninduced	0.539

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.565
SRR8400027	Control - Root	2.805