Gene detail information of Glyur000171s00016617.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01190.1 | 7.00E-68 | cytochrome P450, family 78, subfamily A, polypeptide 8 |
| NR | XP_007135293.1 | 5.73E-87 | hypothetical protein PHAVU_010G117100g [Phaseolus vulgaris] |
| COG | YP_004965447.1 | 3.00E-19 | cytochrome P450 [Streptomyces bingchenggensis BCW-1] |
| Swissprot | tr|O48927|C78A3_SOYBN | 1.00E-80 | Cytochrome P450 78A3 |
| trEMBL | tr|V7ANP6|V7ANP6_PHAVU | 2.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:ESW07287.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00171 | 168027 | 168551 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP78A8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000171s00016617.1 | PF00067.17 | p450 | 9 | 148 | 5.50E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.692 |
| SRR1783600 | control | 2.111 |
| SRR1783602 | moderate drought stress | 1.956 |
| SRR1811619 | moderate drought stress | 2.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.641 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.929 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.520 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.664 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.122 |
| SRR2868004 | Drought Stress (root) | 2.890 |
| SRR2967015 | Control (root) | 3.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.984 |
| SRR9715740 | Leaf | 3.111 |
| SRR9715741 | Leaf | 3.907 |
| SRR9715739 | Root | 9.037 |
| SRR9715742 | Root | 4.451 |
| SRR9715743 | Root | 7.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.264 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.089 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.659 |
| SRR8400027 | Control - Root | 2.304 |