Gene detail

Gene detail information of Glyur000171s00016607.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80170.1	1.00E-94	Pectin lyase-like superfamily protein
NR	XP_004486686.1	0	PREDICTED: probable polygalacturonase At1g80170-like isoform X1 [Cicer arietinum]
COG	YP_001179193.1	7.00E-24	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q94AJ5\|PGLR5_ARATH	1.00E-127	Probable polygalacturonase At1g80170 (Precursor)
trEMBL	tr\|K7M8U7\|K7M8U7_SOYBN	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G01250.4}

Sequence

Transcript Sequence

>Glyur000171s00016607.1
CTGTTTGTTCCCAGTGAACAGCACTTGTAAGATCCTGTCAGCAGTTAGTGTCGGTATCATTGAGAACCAGCCATGGTCTGAGGCTGACAGAAAAAAAATGAAGAACCTCGGATATTGTTCACCTTCACCACTTGTNATTGTCTTCATTCATATAAACATACTCGTTACTCCTTTTCTCACCCATGCAGAAGAAGGGTTTGACTCTGTTATCCGGCTCCCACATTCCGGGTCGACCAGAACCCGAACCAGATCTAAACGGGTTCTTTCTGTCACTGATTTTGGGGCAAAAGGGGATGGCTTTCATAATGACACCGATGCCTTCCTGGAGGTTTGGAGGATTGCTTGTTCTCTATCTGGATTTACAAATATTGTTTTTCNATATGGGAAAACTTTTCTGGTCCATCCAGTTGACATTGGTGGACCATGTCGATCTAAGATCACTTTGAGGATCTCAGGTACAATAGTTGCACCGCGAGATCCNGAGGCATGGTGTGGCTTAAATCAGCGCAAATGGCTTTACTTCCACGGGGTGAATCACCTTGCTGTAGATGGTGGAGGGAGGATAGATGGAATGGGACAGGAATGGTGGGCCAGATCTTGCAAGAGAAACTCCACAAACCCGTGTCATCCAGCTCCAACGGCCTTGACTTTTCACAAATGCAAGAATCTGAAAGTCAGAAACCTTGTGCTGCTAAATAGCCAACAAATGCACATGGCATTCACTAGCTGTATGCGGGTTGTTGCATCCCATCTCAAAGTATTAGCACCTGCTTTCAGCCCTAATACTGATGGAATCCACATTAGTGCATCAAAGGGTGTTGAGATCAAGGATAGTGTCATTAGAACAGCTTTTAGCATCATTGGTAGCTTGGGGAAATCGAAGGCATGGGAGAAGGTTCAAAATATAAATGTTAATGGAGCTTATTTTTTCAACACTGATAATGGGGTGAGAATCAAAACATGGCAGGGTGGGAATGGTCTTGCCTCCCAGATCACATTCAAGAATATCTTGATGGAAAATGTGTCCAATCCAATAATAATAGATCAATTCTACTGTGATTCACGACATCCATGTCAGAATCAGGAAGTTCAGCCACAGAAGAAGCAATTAAATTTGCTTGCAGTGATGCCTCTCCATGTGAAGGATTATATNTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00171	92039	96429	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000171s00016607.1	PF00295.12	Glyco_hydro_28	93	250	6.50E-39
Glyur000171s00016607.1	PF00295.12	Glyco_hydro_28	255	330	4.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.222
SRR1783600	control	9.746
SRR1783602	moderate drought stress	5.929
SRR1811619	moderate drought stress	5.701

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.998
DRR006520	Root Summer glycyrrhizin high producing strain	8.451
DRR006521	Root Winter glycyrrhizin high producing strain	4.294
DRR006522	Root Winter glycyrrhizin high producing strain	3.883
DRR006523	Root Summer glycyrrhizin low producing strain	4.883
DRR006524	Root Summer glycyrrhizin low producing strain	4.643
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.526
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.388
SRR2868004	Drought Stress (root)	7.770
SRR2967015	Control (root)	8.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.950
SRR9715740	Leaf	2.627
SRR9715741	Leaf	2.589
SRR9715739	Root	4.532
SRR9715742	Root	5.387
SRR9715743	Root	5.834

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.064
SRR8749028	MeJA induced 9h	0.308
SRR8749029	MeJA induced 9h	0.540
SRR8749030	Uninduced	0.110
SRR8749031	Uninduced	0.430
SRR8749032	Uninduced	0.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.549
SRR8400027	Control - Root	14.502