Gene detail

Gene detail information of Glyur000171s00016602.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66810.1	2.00E-09	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004486691.1	7.70E-52	PREDICTED: zinc finger protein 36, C3H1 type-like 2-B-like [Cicer arietinum]
Swissprot	tr\|Q10MN8\|C3H21_ORYSJ	8.00E-12	Putative zinc finger CCCH domain-containing protein 21
trEMBL	tr\|V7BXJ1\|V7BXJ1_PHAVU	7.00E-46	Uncharacterized protein {ECO:0000313\|EMBL:ESW22712.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00171	55204	56976	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000171s00016602.1	PF00642.19	zf-CCCH	50	73	0.0002
Glyur000171s00016602.1	PF00642.19	zf-CCCH	91	115	0.00014

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.119
SRR1783600	control	0.099
SRR1783602	moderate drought stress	0.008
SRR1811619	moderate drought stress	0.123

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.114
DRR006520	Root Summer glycyrrhizin high producing strain	0.174
DRR006521	Root Winter glycyrrhizin high producing strain	0.180
DRR006522	Root Winter glycyrrhizin high producing strain	0.018
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.695

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.380
SRR2868004	Drought Stress (root)	0.364
SRR2967015	Control (root)	0.045

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.715
SRR9715740	Leaf	1.406
SRR9715741	Leaf	1.457
SRR9715739	Root	0.000
SRR9715742	Root	0.229
SRR9715743	Root	0.122

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.359
SRR8749028	MeJA induced 9h	3.990
SRR8749029	MeJA induced 9h	4.050
SRR8749030	Uninduced	1.225
SRR8749031	Uninduced	1.035
SRR8749032	Uninduced	0.907

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.950
SRR8400027	Control - Root	0.852