Gene detail information of Glyur000171s00016598 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37990.1 | 2.00E-71 | ribosome biogenesis regulatory protein (RRS1) family protein |
| NR | XP_007154994.1 | 2.48E-156 | hypothetical protein PHAVU_003G163900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SH88|RRS1_ARATH | 4.00E-115 | Ribosome biogenesis regulatory protein homolog |
| trEMBL | tr|V7CCB1|V7CCB1_PHAVU | 9.00E-157 | Uncharacterized protein {ECO:0000313|EMBL:ESW26988.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00171 | 31813 | 35241 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000171s00016598.1 | PF04939.7 | RRS1 | 12 | 175 | 3.10E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.973 |
| SRR1783600 | control | 56.929 |
| SRR1783602 | moderate drought stress | 49.359 |
| SRR1811619 | moderate drought stress | 49.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.034 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.751 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.330 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.038 |
| SRR2868004 | Drought Stress (root) | 41.572 |
| SRR2967015 | Control (root) | 36.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.002 |
| SRR9715740 | Leaf | 22.736 |
| SRR9715741 | Leaf | 22.812 |
| SRR9715739 | Root | 3.356 |
| SRR9715742 | Root | 29.750 |
| SRR9715743 | Root | 23.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 147.346 |
| SRR8749028 | MeJA induced 9h | 90.304 |
| SRR8749029 | MeJA induced 9h | 101.239 |
| SRR8749030 | Uninduced | 31.628 |
| SRR8749031 | Uninduced | 38.279 |
| SRR8749032 | Uninduced | 26.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.575 |
| SRR8400027 | Control - Root | 40.583 |