Gene detail

Gene detail information of Glyur000170s00011033.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52450.1	5.00E-140	plant U-box 22
NR	KEH24248.1	0	E3 ubiquitin-protein ligase PUB23-like protein [Medicago truncatula]
COG	YP_001957949.1	1.00E-08	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SVC6\|PUB22_ARATH	9.00E-174	E3 ubiquitin-protein ligase PUB22
trEMBL	tr\|A0A072U521\|A0A072U521_MEDTR	0	E3 ubiquitin-protein ligase PUB23-like protein {ECO:0000313\|EMBL:KEH24248.1}

Sequence

Transcript Sequence

>Glyur000170s00011033.1
ATGGATATGGATCAAGAGATTGATGTCCCTTCATTCTTTCTCTGCCCCATCTCATTAGAAATCATGAAGGATCCAGTAACTGTCTCCACGGGCATCACCTACGACAGAGAGAGCATCGAGAAGTGGCTGTTCTTAAACAAGAACAAGGCATGCCCTGTCACAAAACAACCTCTGTCAGATTACCCTGATCTGATAACCCCAAACCACACCCTTCGGAGACTCATTCAAGCATGGTGTACCATGAACTCCTCTCACGGCATCGAAAGAATCCCAACACCAAAACCCCCCGTCACCAAAACCCAGATTTCAAAGCTCCTCAAAGACGCTTCTTTTTCTCCCCTGAAGATGCAGATCAAATGCCTCCGTAGGCTTAGATCCATCGCTTCAGGTAGTGAAACTAACAAACGCTGCATGGAAGCCGCTGGTGCTGTTGAATTCTTGGCTTCCATTGTAATCAACAACAGTTCTTGCAACAACAACGATTGCTATTATTCTGCTGCATCATCAGAATCTAATAACAATAACCCTGATGGTGGTGATGATGGTGGAATATTGAGAACCAGTGCTGTTGATGAAGCCTTAAGCATACTCCACAATCTCCATGTATCCGAATCTGGATTGAAATCCCTCATAGGCTTCAAAAATGGAGAATTTATTAACTCCTTGACAAGGGTCATGCAAAAGGGGTTCTTTGAGTCACGTGCCTATGCAGTTTTCTTGTTGAAATCCATGTCAGAAGTGGCTGATCCATTGCACCTGCTACATCTAAGAACTGAATTGTTCGTNGAGTTAGTGCAAGTTCTGAAGGACCAGATCTCAACCAAGGCATCAAAAGCAACACTTGAGACACTGATCCAACTCTGTCCATGGGGTAGAAACAGAGTCAAAGCTGCAGGAGCAGGAACTGTTCCTGTTCTGATAGAGCTTTTTCTCGATTGTAAGGAAAGAAAGCCTAATGAAATGATGTTGGTGTTGTTGGAGTCGCTGTGTCAGTGTGCAGAGGGAAGGGCNGAACTTTTGAGTCATGGGGCAGGGCTTGCCATTGTGTCTAAGAAGATTCTGAGGGTTTCAACAGTGGCAAATGACAGGGCTGTGAGGATTCTGTTGTCTATCTCTAAATCCTCTGCGACACCGAATGTTGTTCAGGAGATGCTGAAACTGGGTGTGGTGGCTAAGCTGTGTTTGGTGCTTCAGGTGGATAGTGGGNTGAAGGCTAAGGAGAAAGCGAGAGAGATACTCAAATTGCATGGTCGTGTTTGGAGGAATTCTCCATGCATTCCTACCAGTTTGCTTTCTTCCTACCCCAACTATGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	285651	286967	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00011033.1	PF04564.10	U-box	9	83	6.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.166
SRR1783600	control	0.162
SRR1783602	moderate drought stress	0.448
SRR1811619	moderate drought stress	0.457

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.284
DRR006520	Root Summer glycyrrhizin high producing strain	50.222
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	56.934
DRR006524	Root Summer glycyrrhizin low producing strain	55.906
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.247
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.783

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.001
SRR2868004	Drought Stress (root)	36.002
SRR2967015	Control (root)	89.704

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	464.773
SRR9715740	Leaf	145.943
SRR9715741	Leaf	603.211
SRR9715739	Root	243.613
SRR9715742	Root	411.983
SRR9715743	Root	377.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	436.794
SRR8749028	MeJA induced 9h	695.099
SRR8749029	MeJA induced 9h	432.372
SRR8749030	Uninduced	1077.331
SRR8749031	Uninduced	911.880
SRR8749032	Uninduced	471.995

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.631
SRR8400027	Control - Root	35.588