Gene detail information of Glyur000170s00011027 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52380.1 | 9.00E-79 | chloroplast RNA-binding protein 33 |
| NR | KEH24256.1 | 2.92E-178 | 33 kDa ribonucleoprotein [Medicago truncatula] |
| COG | YP_004339647.1 | 1.00E-16 | RNP-1 like RNA-binding protein [Hippea maritima DSM 10411] |
| Swissprot | tr|P19684|ROC5_NICSY | 1.00E-100 | 33 kDa ribonucleoprotein, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U4H5|A0A072U4H5_MEDTR | 1.00E-178 | 33 kDa ribonucleoprotein {ECO:0000313|EMBL:KEH24256.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 247622 | 250301 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00011027.1 | PF00076.17 | RRM_1 | 113 | 181 | 2.90E-21 |
| Glyur000170s00011027.1 | PF00076.17 | RRM_1 | 216 | 286 | 1.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.115 |
| SRR1783600 | control | 4.338 |
| SRR1783602 | moderate drought stress | 9.397 |
| SRR1811619 | moderate drought stress | 9.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.839 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.467 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.989 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.799 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.771 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.050 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.712 |
| SRR2868004 | Drought Stress (root) | 9.794 |
| SRR2967015 | Control (root) | 9.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.108 |
| SRR9715740 | Leaf | 40.985 |
| SRR9715741 | Leaf | 30.307 |
| SRR9715739 | Root | 4.867 |
| SRR9715742 | Root | 4.471 |
| SRR9715743 | Root | 4.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.844 |
| SRR8749028 | MeJA induced 9h | 10.914 |
| SRR8749029 | MeJA induced 9h | 9.531 |
| SRR8749030 | Uninduced | 11.005 |
| SRR8749031 | Uninduced | 9.402 |
| SRR8749032 | Uninduced | 16.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.018 |
| SRR8400027 | Control - Root | 5.632 |