Gene detail

Gene detail information of Glyur000170s00011026

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11820.1	1.00E-99	syntaxin of plants 121
NR	XP_003519111.1	6.07E-152	PREDICTED: syntaxin-121-like [Glycine max]
Swissprot	tr\|Q9ZSD4\|SY121_ARATH	2.00E-131	Syntaxin-121
trEMBL	tr\|I1JGG8\|I1JGG8_SOYBN	2.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G35210.1}

Sequence

Transcript Sequence

>Glyur000170s00011026.1
TTTTAATTCCACAATTTATCTTCACAATTTGAAAAGTCTTGTCTTAACAATTGAATCAGGTTTACAATTTTAAAATGTTTGTTCCGTAAAACACTTGTTAGTTGATTATTATTTGAAAAGAAAAAAGAAAAACGCTGCAACTCTTGAAGACCAAAATCAGTTAGAAACAGCCTTTAAAACTGAAGAGTCCGCAACCCATTCCTCTTCATTTGTTCATTCCAATATTCATCACACCCTCAAAACAAAAACAATAAAAACACTTCCTTCCCTTCATCGCAATCCTTCTCTGTTTTTGGTAAGCAACAAAACGCGAACGAGAGAGAGAGAGAGATCAGAATGAACGACTTACTCTCCGAGTCCCACGTCATCCAGATGGCGGAGGGAACCACCGGCGCCGCCACGAGCCTAGGGAAGTTCTTCGAGGAAGTGGAGGCGGTGAAGGAGGACCTGAAAGAGTTACAGGGTCTCCACGTGAGGCTCCGCAACTCACACGAACAGAGCAAGAGCCTCCACAGCGCCAAGGCNGTGAAGGACCTTCGGTCTCGCATGGACTCTGACGTGTCCCTCTCCCTCAGGAAGGCCAAGCTCATCAAGGCCCGGTTAGAGGCCCTCGACCGGTCCAACCAGGCCAGCCTGTCACTCCCCGATTGTGGACCCGGTTCGTCTTCAGACCGGACCCGGTCCTCTGTTGTAAGCGGGTTGAGGAAGAATCTAAAGGACTCTATGGAGAGCTTCAACGCCCTGAGGGAGCAGATATCCTCTGAATACAGAGACACCGTGCAGCGTCGATACTACACTGTCACCGGAGAGAACCCTGATGACAAAACCGTTGACCTCCTCATCTCCACCGGTGAGAGTGAAACATTTTTACAGAAGGCGATCCAAGAGCAAGGGAGGGCGACGGTGATGGACACAATACAAGAGATTGAGGAGAGGCATGGGGCGGTGAAAGAGATAGAGAGGAATCTGAACGAGCTGCACCAAGTGTTCATGGACATGGCAGTGCTGGTGGAAACCCAGGGGGAACAGTTGGATGACATAGAGAGCCACGTGGCGCGAGCTAACTCGTACGTCAGGGGTGGGGTCCAGCAATTGCATGTTGCGAGGAAGCACCAGAAGAATACCCGCAAATGGACCTGTTTTGCCATCATACTCCTCCTCATCATCGCTTTGATCATTATTCTCCCCATTGTTTTGAAAAATTAATTAATACTAGTACTTGTTTAATGGGTTGGCCGTTGGTGTCATGATCTCATCCCATCCCATCCCATCCCATCCCATTGGCGACTGGTGGCTGTTATGGGATCAAAGTCAAACATCAAAGCTTGGTAATTGGTATAGTCAAGTCAATGTGCCGCCATCACCCTTAGGCCTTAGCATATATAAGAAAAAATACCTTCATTTCTTTTTGTATATCTTTTTTGGTCGCGTGTTTTGTGTGTGTGTAGTTTTTTTTTTTTTTTAAATTTCTATTTTCCTTGTTTACACGGTTTGACGTACATTTGAAGACTTTTCCACAAAAGATAAATGTGTTGGAAGATTTTAGATGCATGGTTTCTAGAATCAGCAGATGGGGGGCCTCGATCAGTCAGTTACTGGCCAGCTAGCTAGCGTGGAGGCCGGGGTAGTTAGTTAAAGCATTCTTATCTCTAAAAATTGGCATGTTTGTTTGTTGTAATATATNTGAAAGAGAAGAGAACGGAGACAGAATACGGCGGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	242255	244901	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00011026.1	PF00804.20	Syntaxin	25	130	3.50E-10
Glyur000170s00011026.1	PF05739.14	SNARE	199	261	1.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.241
SRR1783600	control	3.403
SRR1783602	moderate drought stress	3.787
SRR1811619	moderate drought stress	3.920

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.529
DRR006520	Root Summer glycyrrhizin high producing strain	6.821
DRR006521	Root Winter glycyrrhizin high producing strain	5.289
DRR006522	Root Winter glycyrrhizin high producing strain	5.368
DRR006523	Root Summer glycyrrhizin low producing strain	3.299
DRR006524	Root Summer glycyrrhizin low producing strain	3.327
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.612
SRR2868004	Drought Stress (root)	57.164
SRR2967015	Control (root)	43.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	158.342
SRR9715740	Leaf	47.487
SRR9715741	Leaf	267.878
SRR9715739	Root	25.162
SRR9715742	Root	38.456
SRR9715743	Root	36.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.046
SRR8749028	MeJA induced 9h	85.530
SRR8749029	MeJA induced 9h	116.778
SRR8749030	Uninduced	159.733
SRR8749031	Uninduced	145.605
SRR8749032	Uninduced	130.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.964
SRR8400027	Control - Root	22.976