Gene detail

Gene detail information of Glyur000170s00011011

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10660.1	0	calmodulin-domain protein kinase cdpk isoform 2
NR	XP_003520722.2	0	PREDICTED: calcium-dependent protein kinase 2-like [Glycine max]
COG	YP_004904866.1	6.00E-19	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q38870\|CDPK2_ARATH	0	Calcium-dependent protein kinase 2
trEMBL	tr\|K7KG55\|K7KG55_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36240.2}

Sequence

Transcript Sequence

>Glyur000170s00011011.1
CAAAATCACCCCTTTTCACGGGTTTTCCTCGTTCCATTTTCTGTTCCCATTTTCTTAAGAGATTTTTTCCCCTTTCCATGTTCTTATGCTCTCTTCTTTGAGACACTTGTAGTTGTATGTACACACATGCTTCACGGTGTGTTAAATAGAAATCCTTTTTCTCTTTCTTCTTAACTCTGACAGTGGGGTTAGTGCAGAATTTCGAATAAGATTTCCGGGGCCTCATTTGGTTCTTGTTTCTTAGAAAAAACAAGGAGTGATTAACATGGGAAACAATTGTGTTGGATCGAGAACTTCAAAAGATGGACTATTTCCCTCTGTTCTTCCAACTTCATTCTGGTGGTCACAGCCAATGAGGGGAATAGAAACTTCCACTGCACCTTCCCTTGGGAGTACTAAAAATCCAAACACAAATGCTCCAGAAACTGTTCAACAAAAGGCACCAGTGATGGTGAAAATTGACAACAAGGAGATGAAGCCAGTTCAANTTAATAAACTGGACAAAGAGACTAATAATAAGCCTTCGGAGGAACAAGCTATGACGATGAAGGAACATGCTAGAGCATCACCAACAAGTAGACAAACAAAACCAAAGATGCCATATGCTATGAAGAGGGTAGCAGCAGCAACTGCTGCAGGGCTTCAAGCAGAGTCAGTTTTGCTGAGAAAAACTGGTCACCTTAAGGAGTACTACAATTTGGGAGCTGAGCTTGGGAAGGGACAATATGGAACTACTTCTCTTTGCTTGGAGAAGGGTACAGGGAAAAAATATGCATGCAAGTCCATCCCAAAGGTGAAACTGGTNAGAGATGATGATGTGGAGGATATGAGGAGGGANATTCAGATAATGCATCACTTGGCCGGGAGTCCCAGTGTGGTATCCATTAAAGGGGCTTATGAGGATGCTGTTGCGGTTCATGTTGTCATGGAACTATGTGAAGGGGGTGAGCTTTTTGATAGGATTGTGGAAANAGGGCATTACACTGAAAGAAAGGCTGCTAAACTTGCAAGGACTATAGTTAGNTTTATAGAGGCTTGTCATTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTCCTTTTTGTTGATGGGCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGATATTTTTAGTGATGTGGTAGGAAGTCCTTATTACATTGCACCTGAGGTTCTACGCGAGCGTTATGGCCCAGAAGCTGATGTGTGGAGTGCAGAATCGGAGCAAGAGATATTTCAGGAGGTTTTGCATGGTGATCTTGATTTCTCTTCGGATCCTTGGTCAAGTATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGTTAACAGCCCATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGACGGTGTTGCTCCGGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGTCTAAAGCAGTTTTCTGCTATGAACAAGCTCAAGAAAATGGCTTTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCTGGGTTGAAAGAATTGTTTAAAATGATAGATACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGATTGGACTGAAAATGTTTGGTGCTAATCTCAGTGAACCTGAAATTTTCGATCTGATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGCTGACAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCTGGATGAGATTCAACAAGCTTGTGAAGAATTTGGCATGGAGGGTGTCCACTTGGAGGAAATGATCCGAGAAGCTGATCAGAATAATAAAAAACAAGGAGTGATTAACATGGGAAACAATTGTGTTGGATCGAGAACTTCAAAAGATGGACTATTTCCCTCTGTTCTTCCAACTTCATTCTGGTGGTCACAGCCAATGAGGGGAATAGAAACTTCCACTGCACCTTCCCTTGGGAGTACTAAAAATCCAAACACAAATGCTCCAGAAACTGTTCAACAAAAGGCACCAGTGATGGTGAAAATTGACAACAAGGAGATGAAGCCAGTTCAACTTAATAAACTGGACAAAGAGACTAATAATAAGCCTTCGGAGGAACAAGCTATGACGATGAAGGAACATGCTAGAGCATCACCAACAAGTAGACAAACAAAACCAAAGATGCCATATGCTNCATTTATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	142051	146381	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00011011.1	PF00069.20	Pkinase	143	385	1.20E-50
Glyur000170s00011011.1	PF13499.1	EF-hand_7	433	492	2.00E-09
Glyur000170s00011011.1	PF13499.1	EF-hand_7	507	557	8.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.426
SRR1783600	control	0.422
SRR1783602	moderate drought stress	0.148
SRR1811619	moderate drought stress	0.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.618
DRR006520	Root Summer glycyrrhizin high producing strain	2.580
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.886
DRR006524	Root Summer glycyrrhizin low producing strain	4.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.161

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.484
SRR2868004	Drought Stress (root)	6.147
SRR2967015	Control (root)	1.622

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.726
SRR9715740	Leaf	7.851
SRR9715741	Leaf	7.968
SRR9715739	Root	1.568
SRR9715742	Root	3.569
SRR9715743	Root	3.360

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.391
SRR8749028	MeJA induced 9h	10.706
SRR8749029	MeJA induced 9h	8.331
SRR8749030	Uninduced	71.106
SRR8749031	Uninduced	29.947
SRR8749032	Uninduced	6.722

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.338
SRR8400027	Control - Root	2.629