Gene detail information of Glyur000170s00011009 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35880.1 | 2.00E-41 | TPX2 (targeting protein for Xklp2) protein family |
| NR | XP_006604667.1 | 0 | PREDICTED: micronuclear linker histone polyprotein-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GYX9|WDL1_ARATH | 3.00E-24 | Protein WVD2-like 1 |
| trEMBL | tr|K7MZD0|K7MZD0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G38900.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 133683 | 137625 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00011009.1 | PF06886.6 | TPX2 | 239 | 292 | 1.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.663 |
| SRR1783600 | control | 42.779 |
| SRR1783602 | moderate drought stress | 42.390 |
| SRR1811619 | moderate drought stress | 42.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.769 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.952 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.638 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.561 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.764 |
| SRR2868004 | Drought Stress (root) | 23.961 |
| SRR2967015 | Control (root) | 18.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.813 |
| SRR9715740 | Leaf | 24.128 |
| SRR9715741 | Leaf | 20.180 |
| SRR9715739 | Root | 1.071 |
| SRR9715742 | Root | 9.376 |
| SRR9715743 | Root | 7.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.633 |
| SRR8749028 | MeJA induced 9h | 15.076 |
| SRR8749029 | MeJA induced 9h | 16.471 |
| SRR8749030 | Uninduced | 8.242 |
| SRR8749031 | Uninduced | 7.184 |
| SRR8749032 | Uninduced | 3.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.482 |
| SRR8400027 | Control - Root | 47.513 |