Gene detail information of Glyur000170s00011008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52370.1 | 3.00E-157 | FASCICLIN-like arabinogalactan protein 15 precursor |
| NR | XP_007163001.1 | 0 | hypothetical protein PHAVU_001G197900g [Phaseolus vulgaris] |
| COG | YP_007146438.1 | 4.00E-08 | secreted/surface protein with fasciclin-like repeats [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q8RWC5|FLA16_ARATH | 0 | Fasciclin-like arabinogalactan protein 16 (Precursor) |
| trEMBL | tr|V7D0F6|V7D0F6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 128260 | 132417 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00011008.1 | PF02469.17 | Fasciclin | 53 | 184 | 7.50E-19 |
| Glyur000170s00011008.1 | PF02469.17 | Fasciclin | 300 | 409 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 84.309 |
| SRR1783600 | control | 84.547 |
| SRR1783602 | moderate drought stress | 83.634 |
| SRR1811619 | moderate drought stress | 84.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.530 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.898 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.461 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.848 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.724 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 92.551 |
| SRR2868004 | Drought Stress (root) | 68.955 |
| SRR2967015 | Control (root) | 54.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 91.744 |
| SRR9715740 | Leaf | 54.264 |
| SRR9715741 | Leaf | 54.066 |
| SRR9715739 | Root | 74.779 |
| SRR9715742 | Root | 139.711 |
| SRR9715743 | Root | 116.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.778 |
| SRR8749028 | MeJA induced 9h | 47.181 |
| SRR8749029 | MeJA induced 9h | 72.096 |
| SRR8749030 | Uninduced | 24.792 |
| SRR8749031 | Uninduced | 5.731 |
| SRR8749032 | Uninduced | 10.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.897 |
| SRR8400027 | Control - Root | 138.704 |