Gene detail

Gene detail information of Glyur000170s00011001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06530.2	0	ABC-2 type transporter family protein
NR	XP_004494278.1	0	PREDICTED: ABC transporter G family member 22-like isoform X1 [Cicer arietinum]
COG	YP_008149444.1	2.00E-36	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q93YS4\|AB22G_ARATH	0	ABC transporter G family member 22
trEMBL	tr\|K7K9E6\|K7K9E6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34070.2}

Sequence

Transcript Sequence

>Glyur000170s00011001.1
CTTCTGGGGTCAAAATACCCAGCTTCGNTCGAATTCCCTGTTGTGCTGGTAATCTAGGATGCAAGGAAGACCACAAGCTTGCACAGTCGCAGGCNCCTCCACCCAACTCAACACTGCATTCAACCTACGTGGCATTTTTGTCCATATTAGAGCACAGCTTGATTAGGNATAGCACACACATCAGCGATCGATGAAGAGTCCTTCCAAATTAACCCCTTTCGTTTAATACCAAAAGCTGATCTTCCCCCCCTACTACTTGCATTGACGGACGTGAGTGATGACAGAACCACAATGTGTCCAAACTCTCTCAGGATTCATGATCGCGCGCGGATTGCAATATGGGAAATGAAACACTATCCACGCCCAACACGTGTATGGTACATATGGCCTGGCCGCCCTTCAATTCATCGATGAATGGTCTCACAAGACAAGATTATATATATATATATATACATATGTCGCAAGTTCAGTACTTATCATCACAAATTAAGACTCAATTATGTATGAGTCATGAGTATGTAGCTGATCATGATATGATATTTGCCACTAAGTAGAAGGGTAGTTCGGTAACTGTACTGATAGTCATAACTAAATGGGGCCTTTATAAAGAGGGGCGGGCAGTGTGNTCACGAGTGCTCCACATGATTGGTAATGGTATACGCGCTGTCCAGATCTCTATTCCATTTTCTTATAATCCCGCGAGTTTCTTCTCTACCCATTATTCTCTGCCTTCTGCTTCCTCTCTGCTCTTCACTNCTCGATCCTTTCTCAGAAAAACGTGGTGGTGATAAAGATGGAGAATGCAAATACAAATGGATTAATGAGAACGAAATCAGATCAGCTAGTGGAGTCAGTGGTAGCAGCTCTGAAGTCATCATCACCACCATCAAGTGATCATGATCAATCAACAAGAGTGGTGGAGGGTGGTGGGACCACCCTGACAAGGAAGCCAAGCAGGAGGGCATCACCGGGTGGCAAGAACACACACATCAGGAAGGCTAGGAGCGCCCAGTTGAAGGTTGAGCTGGACGAGGTTAGTAGCGGTGCGGCTCTTAGTCGAGCTTCTAGTGCTAGCTTGGGTCTCTCTTTCTCCTTCACTGGCTTCACTGTTCCTCCTGATGAAATCGCTGACTCCAAACCCTTCAGTGATGATGATATCCCGGAGGATATTGAAGCTNGAATTCGTAAGCCAAAGTTTCAAACAGANCCTACTCTGCCAATATATCTNAAGTTCAAGGATGTGACATACAAGGTAGTGATTAAAGGCATGACAAAAACTGAGGAGAAGGATATCTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAGGTTTTGGCACTGATGGGTCCCTCAGGAAGTGGAAAGACATCTTTGTTAAATCTACTTGGAGCAAGGGTGAACCATCCCACAATTGGTGGCTCTATCACTTACAATGACCAACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAAACATTGACATACGCAGCCCGCCTAAGGTTGCCAAATACGTTAACAAAGGAGCAAAAGGAAAAACGAGCTTTAGATGTTATCGATGAGCTGGGTTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTATCTGGTGGAGAGAGGAAGAGAGTTTGTATAGGCAACGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCAACAACAGCCTTGAGGATAGTTCAGATGCTACATGACATAGCAGAGAATAACCAGATAGATATTTTCACCATCACTCAAAAGTCAAACCTTTATATCACTCTCCTTTTGGTCTTATGCCAGCAGGCTGGTAAAACTGTAGTGATAACAATCCATCAACCATCAAGCAGACTCTTCCATAAGTTTGATAAGTTGATCCTTCTGGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTACTTCAAATTCATAGGGTGNACTCCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTGGACCTTGCAAATGGAAACATAAATGATATTTCTGTGCCATCAGAGTTGGAGGATAAGTATCTGGTGGAGGCATATGAGACTAGAGTTGCAGAAACAGAGAAGAAAAGGCTAATGGNTCCAATCCCCCTTGGTGAAGAACTCAAGTCTAAGGTTTGTTCTCGTAAAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATACTCAATACTGTTCTCTAGAGGATTCAAAGAACGGAGGCATGACTACTTTAGCTGGTTGAGAATCACGCAAGTTTTATCCACTGCAGTGATCTTGGGATTACTCTGGTGGCAATCNGATGCCAACAACCCAAAGGGTCTGCAAGACCAGAGAGCAATGCTGAATAAGGAACGAGCAACAGATATGTACAGATTAAGTGCTTACTTTGTGGCTAGAACTACAAGTGATATTCCACTAGACTTGGTGTTACCAGTGCTTTTCCTCCTTGTTGTTTATTTCATGGCCGGATTGAGACTAAGTGCAGAGCCCTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATCGTTGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAAGGCAACAACTTTGGCTTCAGTGACTGTCATGACTTTCATGTTGGCTGGAGGTTTCTTTGTGAAGAAAGTCCCCNTATTTATATCATGGATTCGCTACCTATCCTTCAACTACCACACGTACAAACTTTTGCTCAAGGTGCAATATGAACACATGACCCCTGCCATAAATGGGATCAGAATTGACAGTGGTTTCAATGAGGTTGCTGCTCTGATAGCCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTCTGCGGCGGATGAAACTCCAACCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	93950	104662	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00011001.1	PF00005.22	ABC_tran	168	319	8.20E-28
Glyur000170s00011001.1	PF01061.19	ABC2_membrane	541	673	6.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.203
SRR1783600	control	0.181
SRR1783602	moderate drought stress	0.269
SRR1811619	moderate drought stress	0.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.958
DRR006520	Root Summer glycyrrhizin high producing strain	0.901
DRR006521	Root Winter glycyrrhizin high producing strain	3.971
DRR006522	Root Winter glycyrrhizin high producing strain	4.020
DRR006523	Root Summer glycyrrhizin low producing strain	0.418
DRR006524	Root Summer glycyrrhizin low producing strain	0.417
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.630
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.114
SRR2868004	Drought Stress (root)	1.403
SRR2967015	Control (root)	1.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.869
SRR9715740	Leaf	23.813
SRR9715741	Leaf	25.066
SRR9715739	Root	0.071
SRR9715742	Root	0.357
SRR9715743	Root	0.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.388
SRR8749028	MeJA induced 9h	0.948
SRR8749029	MeJA induced 9h	0.564
SRR8749030	Uninduced	0.355
SRR8749031	Uninduced	0.154
SRR8749032	Uninduced	0.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.385
SRR8400027	Control - Root	1.566