Gene detail

Gene detail information of Glyur000170s00010995

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06570.2	2.00E-99	alpha/beta-Hydrolases superfamily protein
NR	XP_003521507.1	0	PREDICTED: probable carboxylesterase 15-like [Glycine max]
COG	YP_706618.1	8.00E-23	esterase [Rhodococcus jostii RHA1]
Swissprot	tr\|Q9FG13\|CXE15_ARATH	5.00E-122	Probable carboxylesterase 15
trEMBL	tr\|I1JQC9\|I1JQC9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36380.1}

Sequence

Transcript Sequence

>Glyur000170s00010995.1
CTCCCTCGTAGCTAGCGAATTTGCATTTGCAAAACACACAAGAATATCATAATATCATAGCAATAGCTTCATCATATATTATACTAATGGGTTCCCTTCCCCACGTAGTAGAGGATTGCATGGGCTTCCTCAAACTCTTTAGCGACGGTTCTGTTTTCCGTTCCAACGACATCAAATTCCAAGTTTCCCCCATCGAAGACAACTCCGTATCCTTCAAGGATTGCCTCTTCGACAAAAGATTCAACCTTTTTCTTCGCCTCTACAAACCCCAAAACCAAACACCCTCTTCCTTAACCGACAACAACAATGGAAAAAACAAGAACAAGCTTCCCGTGGTGATGTTCCTTCACGGAGGAGGCTTTTGTTTTGGGTCACGCACGTGGCCCCACATTCACAACTGTTGCGTGCGACTCGCCTCGCGACTCCACGCTCTCGTCGTTGCGCCGGACTACCGCCTCGCACCGGAGCACCGGATGCCTGCGGCGGTGGACGACGCGGTCGAGGCCGTGAGGTGGCTACAGAGGCAGGGGTTGAGCTTAAAGGATCAGGAACACGGTGGGGACGCGTGGTTGAATGGTGACGTTGACTTTGACCGCGTGTTCCTTGTGGGTGACTCCTCTGGCGGGAACATTGCGCACCACCTCGCGGTCCGGTTCGGGTCCGGTTCGATTGACATGGANCCGGTTCGGGTACGAGGTTATGTCCTGTTGGCGCCGTTTTTTGGTGGAGAGGTTCGAACCAAGTCCGAGGAAGGCCCTCCGGAACAAACATTGAACCTTGACTTGCTAGACAGATTTTGGAGGCTGTCGATGCCTGTTGGAGGGACAAGAGACCACCCATTGGCGAATCCATTCGGACCTGGAAGCCCAAATCTTGCACAACTAAAGCTTGACCCCATTTTGGTGATAGTAGGTGGCAATGAATTGCTTAAGGATAGGGCAGCAAACTACGCAACAAGGTTGAAAGAAATGGGGAAAGACATTAAATACGTTGAGTTTGAAGGGTGCGAACATGGGTTTTTCACGCACGATTCATATTCACAAGTTGCAGAAGAGGTCATCCATATCCTTAAACGATTCGTGCTTGAAACTTTGGGTGGGCTAGAAATACACCTAGAAAATTAGCAAGTTAAAGGCACTAATGTAAAGTTAATTAATCCATATTTTAGCCTATGTTAAAGTAGTTTGTGGGAATGAATTATGCCAATGTTATCGGTNTGTACGAGTTTTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	54440	58468	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00010995.1	PF07859.8	Abhydrolase_3	84	312	9.30E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.710
SRR1783600	control	2.674
SRR1783602	moderate drought stress	2.716
SRR1811619	moderate drought stress	2.754

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.659
DRR006520	Root Summer glycyrrhizin high producing strain	15.418
DRR006521	Root Winter glycyrrhizin high producing strain	0.271
DRR006522	Root Winter glycyrrhizin high producing strain	0.262
DRR006523	Root Summer glycyrrhizin low producing strain	1.789
DRR006524	Root Summer glycyrrhizin low producing strain	1.975
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.504
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.579

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.288
SRR2868004	Drought Stress (root)	218.425
SRR2967015	Control (root)	190.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.522
SRR9715740	Leaf	0.613
SRR9715741	Leaf	3.645
SRR9715739	Root	0.806
SRR9715742	Root	15.316
SRR9715743	Root	10.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.498
SRR8749028	MeJA induced 9h	6.301
SRR8749029	MeJA induced 9h	12.273
SRR8749030	Uninduced	14.097
SRR8749031	Uninduced	39.025
SRR8749032	Uninduced	62.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.410
SRR8400027	Control - Root	6.377