Gene detail

Gene detail information of Glyur000170s00010991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38920.1	4.00E-104	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related
NR	KEH24305.1	0	E3 ubiquitin-protein ligase BAH1-like protein, putative [Medicago truncatula]
Swissprot	tr\|Q8GW10\|BAH1L_ARATH	2.00E-128	Probable E3 ubiquitin-protein ligase BAH1-like
trEMBL	tr\|A0A072UEU1\|A0A072UEU1_MEDTR	0	E3 ubiquitin-protein ligase BAH1-like protein, putative {ECO:0000313\|EMBL:KEH24305.1}

Sequence

Transcript Sequence

>Glyur000170s00010991.1
CTGCCAATAAGGTCTCATCACATCACAGGTATACTGTGAATGAGATTACTCATGTCTCAGCACAGTTGTTGANCATTTTACCTACCGATTTGCTCACACTTACACCGATCGATTGATTAATTGATTAATTAATAATTAATTATGCAGAGATTATTTAATTAGGGTTTGGAAGTGACGGAAGGGACAAATGAAATTCGGGTACGCATTCAGAGAGTACCTTGAGGAAGAGCGGGAGTGGTTGGTGGACGAGAATTGTGCCCACATTGAATATAACAGGTTAAAAAATGTGTTGAAGAGTTGTCAGAATTGTAAAAACACCTCTTCCGATAAAGACCAGTTGTGTCAATGTCAGTCTTGCCCATTGTGTGATCAGAAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATATAGCAGGATTCTTTAGCTCTAGAGTTAAGCATCTCCTTCATCTTCATATTGCAAAAGGACTGCAGAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAAATGATAAGCAAGCCCTTGCCCAAGAAGGGAAAATTCTAATTGAGTACCTTGCAATGAATGNTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTATGAACGGGGAGAATTTCAAATCTAAGATGCACGCTGAACACATTGAACTTTTACACTCACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATTCTAGTGGGTTAGATGGTTGTGAGCTTCATGGAGTCCGTGGTCACTTTTCATGTGATCTAAATATAACTAAAGNTGTGATGACATTGATTCTTCCAGATTCTATTAAGCTCGAGTATGATCTAACTTGTGCAATTTGCCTGGTAAGATTCTATTTGTATACTACACTAGTGAAAAAGAAGATATTTTATATATCGGTATCTCTTACAAATGCTTGGACTGTGTCATGTGCTTGCCCTGCTGTCTCTGTGATGATTTTCCAAGGCCTTAAAGCTGCAAGTCCAGAGTCAAAGTGTCCNATATGCAGAGAGGTTGGAGTTTATTCTAAGGCAATGCATATGCTAGAACTTGATCTTCTTCTAAAAAGAAGGTGCAAAGAATACTGGAAAGAGAGACTAGCTAGTGAAAGAGTTGATACTTTGAAGCAATCAAAGGAATACTGGAATTTACAGTCCACATATGCAATTGGATTACTGTAGAGGTTTTGTCATGCTCCCAGGAGGTATTTAATGATTTTGAGTTCATCCTACAGCTATGATTTAACTGAGGTGGGGTTTAATTAGTGGCATCTTCAGCCATCACTCTTTGAGGCAGAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	32840	35242	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00010991.1	PF03105.14	SPX	1	87	2.00E-08
Glyur000170s00010991.1	PF03105.14	SPX	103	153	3.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.340
SRR1783600	control	2.127
SRR1783602	moderate drought stress	3.825
SRR1811619	moderate drought stress	3.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.001
DRR006520	Root Summer glycyrrhizin high producing strain	5.984
DRR006521	Root Winter glycyrrhizin high producing strain	2.887
DRR006522	Root Winter glycyrrhizin high producing strain	2.724
DRR006523	Root Summer glycyrrhizin low producing strain	0.316
DRR006524	Root Summer glycyrrhizin low producing strain	0.337
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.375

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.757
SRR2868004	Drought Stress (root)	1.587
SRR2967015	Control (root)	1.099

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.571
SRR9715740	Leaf	3.755
SRR9715741	Leaf	3.445
SRR9715739	Root	1.465
SRR9715742	Root	2.621
SRR9715743	Root	2.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.401
SRR8749028	MeJA induced 9h	1.344
SRR8749029	MeJA induced 9h	0.997
SRR8749030	Uninduced	1.135
SRR8749031	Uninduced	0.528
SRR8749032	Uninduced	0.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.811
SRR8400027	Control - Root	11.026