Gene detail information of Glyur000170s00010987 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54720.1 | 0 | Peptidase M28 family protein |
| NR | BAM72481.1 | 0 | AMP1-like carboxypeptidase [Lotus japonicus] |
| COG | YP_004862551.1 | 7.00E-106 | putative aminopeptidase [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q9M1S8|GCP2_ARATH | 0 | Probable glutamate carboxypeptidase 2 |
| trEMBL | tr|L0N3R1|L0N3R1_LOTJA | 0 | AMP1-like carboxypeptidase {ECO:0000313|EMBL:BAM72481.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 16688 | 22485 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00010987.1 | PF04389.12 | Peptidase_M28 | 334 | 507 | 4.50E-21 |
| Glyur000170s00010987.1 | PF04253.10 | TFR_dimer | 565 | 691 | 7.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.000 |
| SRR1783600 | control | 3.007 |
| SRR1783602 | moderate drought stress | 9.689 |
| SRR1811619 | moderate drought stress | 9.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.028 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.977 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.725 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.356 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.825 |
| SRR2868004 | Drought Stress (root) | 58.881 |
| SRR2967015 | Control (root) | 50.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.751 |
| SRR9715740 | Leaf | 1.274 |
| SRR9715741 | Leaf | 2.533 |
| SRR9715739 | Root | 6.729 |
| SRR9715742 | Root | 17.281 |
| SRR9715743 | Root | 13.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.056 |
| SRR8749028 | MeJA induced 9h | 0.269 |
| SRR8749029 | MeJA induced 9h | 0.594 |
| SRR8749030 | Uninduced | 0.052 |
| SRR8749031 | Uninduced | 0.049 |
| SRR8749032 | Uninduced | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.816 |
| SRR8400027 | Control - Root | 21.480 |