Gene detail

Gene detail information of Glyur000170s00010983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.2	5.00E-40	ubiquitin-specific protease 12
NR	XP_004494297.1	1.02E-150	PREDICTED: uncharacterized protein LOC101489602 [Cicer arietinum]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	4.00E-43	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|A0A072U3M4\|A0A072U3M4_MEDTR	5.00E-143	MATH (Meprin and TRAF-C-like) domain protein {ECO:0000313\|EMBL:KEH24319.1}

Sequence

Transcript Sequence

>Glyur000170s00010983.1
TAGGCACGTGACTCTTCGGTCTCTTCCGTCTACCATGTCCATATCTTTCCTTCAACGCAATATGCAACTTTGGGAGGATCCCCTCTTGAACCGCTTTCCAAGCTCCACCCCGAAACGGTGGTGCGCCTCAGTCACGCGCGAGCTTAGCTTCTCGTTATAATTTTGGTCCCCAAAACCAGTATAGAAATACCCCAGTTTTTAATTTTTTAAATAAGAGATAAAATAAACCAAAACCAGAGAATAGAAATCTCTCTCACTGTTCTTGATTGATAGTATTCGTCGCCACAAACCACCCCTTCAATGTTGCAGCACTCGCCACCAACTCCCATGCCCGCTATAAACTGTCGCTGCTGCCATACAAGTTTGGGTGTTGAATAAGTTTTTATACCCTTGCAATAGAGGATGCAAACAACTCTAATCATTTAATTTAACTATACTTTCATTTACAAATTTAATTTTCACGATTACTAATGGGTACAAGATAATTAGATTGTCCCTCTCCATTATTCATAGTGTCCAGGTCGCCCGCCCAGATCAGTCAAGGTCCCACCAGTGCCGACATCGAGCCCGGAAGCCAGGTAGCGTTCGGGTCTCACGACGGACCCTACTGCGGCGGAGGACGAATCGCGTTCAGGGAGGCTCGATGTGCAGCCACCGCTTCCATCGCCGTCTCTCTGCTGCGGCGTAGTACGAATCGCGTTCAGCCAGGCTGGTCGGGTGATCACGTGCAGTTCCTAAAAATTGGATATGATTCCGTGCTTCTTTTGACTTTTGGAGATAAATGCTTTTGAGCGTGTGATGAATCCAATGGTGGATAATTATCTCACTGCACTGACTGCATACACTAATTACTGCATACAATCCGAATGCCCTTTTTAACACACTCTCGCTCAGTCTCAGACACACACTTCACTCCGATACTCCGTCTTTCTGTGATTTGCGCCCTCCTCGTGGACTCCGTCGCTCGCTCTTACCGGGTTTGTAGAAATGGAGCATCAACAATCGAGTGTCGAGGTGTTTGAGAAATTCACGTGGAAGGTTGAGAATTTCTCTAGCTTAAACGCCAAAAAGCTTTATTCTGAGCCTGTCATCCTTGGTGGCCGTCCATGGAGGATTCTTCTATATCCAAAAGGGAACAATGTGGACTACTTGTCAATTTATTTGGAAGCTGCACAATTTGCCAAACTGCCTAAGGGATGGAATAGAGATGTGAAATTTAAGTTGGTTGTATTTAATCAGATCAATAGCAACATGACTATCACAAAAGAGACTAGCCACAAGTTCCATGCAACACAGAATGACTGGGGTTTCACATCTTTCATGCCTTTAGCTGAGTTTTGTGATACAAGTAAGGGGTTTCTTGTGAATGATGCCTGCATTGTTGGTGTAGAGGTTTCTGTTCATAAGCCAAGACATGAGAATCAAGTGAATCAAGCAGCTAGCTTAACTGCTTCCCCATTGNCTGGAGGTCAAACTGAACATATGGAAGTGGAGGTACCAAAGCCAGAGCCAGGAGGTCAAGGCCAAAGTCCAAAAACTCTTTCACCAGCTTCTACACATGGTTGTATTGAGCCCACNAAACACACCGATGTGGACTTGTTCTCGGCCTCAATGGGTGGTGAACTTGTGGATTTCAAGGGTTTAGGACAAATAGAAAAAGCGTTTGTTCCACTACTAGAGGAAGTATGTTCTCAGCATCCATCACTTNTTGAGTGCCAGCTGAAAAGAAGTCGCAAGTTTACTGAATGGGCATTCACTGCTTTGGGAAGAGTTCTATATTTTCTTAAGACTAGAAAGGTGAAAGATATGAATGACCTAGCTTGTAAGGATCTACAAATTTTATGGGAGGAACTTGAGACATTTAGATTTGATTTGACTTGGCTAGAGCCACATGTGCAGTCCACCTTAGGCATCAAAGGTTATGTGGAGAAAGCAATACANGTAGAAAAGCTGAAGGAGAATATGGTAGCTCTAGAGTTGGAACTAGAGAGGCTCAAGGCGGAGTTGGTTACTGCTGAGGCAAATCTTGATACAGCAAGAANCTTGTTGAAAGCAAAAGGCTTTGAAGAGATGGATTTGGATGCTGGACTAGGATATGGGAGGCCATAGACCTATTGCTAAATATGCATGTCTACATGAATGTAGATCGCCNCTACTAATGTTGTGAATTTTGTAAGGCCATTTCCTTGCTTAAAAACTAGTACCCTGTAATGCATATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	8705	11715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00010983.1	PF00917.21	MATH	18	138	2.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.984
SRR1783600	control	13.212
SRR1783602	moderate drought stress	13.003
SRR1811619	moderate drought stress	13.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.312
DRR006520	Root Summer glycyrrhizin high producing strain	24.091
DRR006521	Root Winter glycyrrhizin high producing strain	9.169
DRR006522	Root Winter glycyrrhizin high producing strain	9.344
DRR006523	Root Summer glycyrrhizin low producing strain	24.320
DRR006524	Root Summer glycyrrhizin low producing strain	24.094
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.266
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.325

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.688
SRR2868004	Drought Stress (root)	36.230
SRR2967015	Control (root)	41.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.075
SRR9715740	Leaf	10.609
SRR9715741	Leaf	10.198
SRR9715739	Root	5.207
SRR9715742	Root	12.904
SRR9715743	Root	12.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.588
SRR8749028	MeJA induced 9h	13.515
SRR8749029	MeJA induced 9h	10.888
SRR8749030	Uninduced	10.469
SRR8749031	Uninduced	4.940
SRR8749032	Uninduced	4.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.065
SRR8400027	Control - Root	20.789