Gene detail

Gene detail information of Glyur000170s00010981

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.3	5.00E-32	ubiquitin-specific protease 12
NR	KEH24319.1	3.88E-126	MATH (meprin and TRAF-C-like) domain protein [Medicago truncatula]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	6.00E-36	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|A0A072U3M4\|A0A072U3M4_MEDTR	1.00E-126	MATH (Meprin and TRAF-C-like) domain protein {ECO:0000313\|EMBL:KEH24319.1}

Sequence

Transcript Sequence

>Glyur000170s00010981.1
ATGGAGCTTCAACAATCGAGAGTTGATGTGTTTGAGAAAGTCACGTGGAAGATTGAGAACTTCTCTCGTCTGAACAACGAAAAGCTTTACTCTGAGCCTGTCATCCTTGGCGGCTATCCATGGAGGATTCTTCTGTATCCAAGAGGGAACAAAAAAAGAGGGGACAAAGCCAACAAAAAAGGAAAAAAGAAAAGAGGGGACAAGGAAGAGTACTTTTCAATTTATTTGGATGCTGTGGAATCTGCTAATATGCGTGCTGGGTGGAGCAGAGTTATGACATACCGGTTGTTTGTATTTAATCAGGTCGATGCCAACATGACAATCAGAAGAGAGTGTAACCACGAGTTCAATGCAAAGGAGATTGACTGGGGTTTCACATCTTTCATGCCTTTAGCCAAATTTCGTGATCCTATAGGGGGGTTTCTTGTCAATGATGCTTGTATTGTTGGTGTAGAGGTTTCGGTTCATAAGTCAAGACATGAGAATCAAGTGAATCAAGCAGCTAGCTTAATTGTTTCCCTAAAATCTGAAGGTCACAAGGAAGTGGAAATTCCAAGGCCAGAGCCAGTTTCTAAACTCTCCGATTTGGAATTGTTTTCAGCCTCAGTTGGTGAGCTTATCGATTTCAGGGGTTTACGACAAATAGAAAAAGCATTTGTTCCCTTGGAAATTCCAAGGCCAGAGCCAGCTTCTAAACTCACCGATTTGGAACTGTTTTCAGCCTCAATTGGCGAGCTTATGGATTTCATGGGTTTAGGACAAATAGAAAAAGCATTTGTTCCACTACTGGAGAAATTTACTGAATGGGCGTTCACGGCTTTGGGCAGAGTTCTATACTTCCTTAATACTAGAAAGGCGAAAGATATGAATGGCCTAGCTTGTAAGGATCTTCAAATTTTATGGGAGGAACTTGAGACATTTATATTTGATCTAACTTGGCTAGAACCCCATGTGCAGTCTGCCTTAGGCATGAAAGATTACGTGGAGAAAGCGATGCGACTGAAGGAGAATGTAGTAGCTCTAGAGCTGGAACGGGAGAGGCTCAAGGCAAAGTTGGTTACTAATGAGGTAAATCTTGATGCAGCAAGAGACTTGTTGAAAGCAAAAGGCTCTGAAGAGGTGGATTTGGATGCTGGACTAGGATATGGGGTACCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00170	4664	6138	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000170s00010981.1	PF00917.21	MATH	18	155	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.174
SRR1783600	control	2.290
SRR1783602	moderate drought stress	1.819
SRR1811619	moderate drought stress	1.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.482
DRR006520	Root Summer glycyrrhizin high producing strain	2.711
DRR006521	Root Winter glycyrrhizin high producing strain	0.253
DRR006522	Root Winter glycyrrhizin high producing strain	0.270
DRR006523	Root Summer glycyrrhizin low producing strain	0.411
DRR006524	Root Summer glycyrrhizin low producing strain	0.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.025
SRR2868004	Drought Stress (root)	0.001
SRR2967015	Control (root)	0.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.627
SRR9715740	Leaf	1.600
SRR9715741	Leaf	0.808
SRR9715739	Root	0.396
SRR9715742	Root	2.268
SRR9715743	Root	2.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.030
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.004
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.675
SRR8400027	Control - Root	4.820