Gene detail information of Glyur000169s00018379.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07200.2 | 0 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_006575408.1 | 0 | PREDICTED: uncharacterized protein LOC100804458 isoform X1 [Glycine max] |
| COG | YP_001105585.1 | 1.00E-14 | Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL 2338] |
| trEMBL | tr|K7M813|K7M813_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37300.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 281285 | 287350 | - |
Gene family
| Gene family | subfamily |
|---|---|
| EAR motif-containing Proteins | other |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018379.1 | PF07724.9 | AAA_2 | 743 | 873 | 6.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.971 |
| SRR1783600 | control | 5.016 |
| SRR1783602 | moderate drought stress | 7.169 |
| SRR1811619 | moderate drought stress | 7.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.925 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.834 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.976 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.246 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.208 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.698 |
| SRR2868004 | Drought Stress (root) | 9.063 |
| SRR2967015 | Control (root) | 9.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.524 |
| SRR9715740 | Leaf | 11.519 |
| SRR9715741 | Leaf | 11.063 |
| SRR9715739 | Root | 1.320 |
| SRR9715742 | Root | 8.841 |
| SRR9715743 | Root | 7.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.089 |
| SRR8749028 | MeJA induced 9h | 7.020 |
| SRR8749029 | MeJA induced 9h | 3.200 |
| SRR8749030 | Uninduced | 3.633 |
| SRR8749031 | Uninduced | 4.785 |
| SRR8749032 | Uninduced | 2.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.787 |
| SRR8400027 | Control - Root | 7.724 |