Gene detail

Gene detail information of Glyur000169s00018377

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58620.1	1.00E-145	zinc finger (CCCH-type) family protein
NR	XP_003519252.1	0	PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform 1 [Glycine max]
Swissprot	tr\|Q9LUZ4\|C3H66_ARATH	0	Zinc finger CCCH domain-containing protein 66
trEMBL	tr\|I1JHD2\|I1JHD2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G39210.2}

Sequence

Transcript Sequence

>Glyur000169s00018377.1
ATGGAATTGGTAAGAGGAGGAGGAACTGATTCTGCAGAGGCCTCAAGGGAAGATATCTCCACCATGTGCAGTGGTTCCAAGAGGAAAACTTCTCAAACCGGTGTGGTCATGGAGGATGAGTATGAAATAAAAGAAGAAGGGCTGCATCTAAAAATTTCTGCTTTGTTGGAATTTTCAGCTGCAGATGATCTTATTGGTTTCAAAGACGCGGTTGAAAAGGAGGGTCATGATGTTGATGAGGTGGGCTTGTGGTATGGTAGGAGGGTTGGCTCAAATAAACTGGGTTACGAAGAGAGGACGCCTCTCATGGTTGCTGCTATGTTCGGAAGCCTTGGTGTATCAACTTATATTCTCAGAACAGGTTGTGTTGATGTTAACCGGCCTAGTAGGTCAGATGGTGCTACTGCACTCCATTGTGCTGTTGCTGGGGGTGCTGCTGCTTCCGCTGAGGTTATCAAGCTTTTGCTTGATGCATCAGCTGATGCTAATGCCGTTGACGCCAATGGTAACCGACCCGTTGACTTGATTGTCCCCGTGGCTAATTCCATCTTCAATCCGAGGAAGAGGGTGCTACAAGCCCTACTGGAGGGTACAGGTGGTGCTGATCAGGAATGTCTTGCATTTCTGGGGGTGGTTGGCCATGTTGATGAACAGCAAAGACAAGATGCGACCATGCCTCGTGTTTCAAAAGATGGGGCTGAGAAGAAAGATTATCCTGTTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATAGTACTGATGAGTTTAGGATGTATACCTTCAAAGTGAAGCCTTGTTCAAGGGCTTACTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCGGGAGAAAACGCGAGGCGGCGCGATCCAANGAAATACCATTATAGTTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCCTGCAGCAAGGGGGATGCGTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACACGGCTTTGCAAGGACGAGGGTGCGTGCACAAGAAGAGTTTGCTTCTTTGCCCACAAGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCGATTCCTTCTCCCAGGTCATATTCTGGAAGTGCTTCTGCATTGGAGATGGGTTCGGTTAGCCCAATTGCACTTGGTTCTCCGTCTGTCTTGATACCACCCACCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTGTTGCCGGAGGAGCCATGTGGCAGACTCAGGCTAATGTTTCTGCCCCTACCCTTCAGCTTCCCAGAAGCAGGTTGAAGACTGCAGTAACTGCTAGAAATATTGATTCAGATATTGAATTGCTTGGACTTGAGACTCATCGACTTCGGCAGCAGCTGATGATGGATGAGATATCTGGTCTTTCCTCTCCTTCCAACTGGAAAAACTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGTGATTATACCACGGTACTAAATAGGCTTTCCGGGGCCAAGCCTGCTAACCTTGATGACATTTTCACGTCTCGCGATCCGTCGATTTTGCCTAAATTCCATGGACTCTCACTTGACATTGCAGGACCTCAGTCACAATCTCCAACCGGAATGCAGATGCGTCCGAATGTGAGCCAGCAACTGCGAAACTATTCTTCTAGCCTTTCCACTTCTAGTGTGATCGGATCGCCAACCTACAGGGTTGATCCATCCAGGGAGGCAGCCACAAAAGCAGCATTGAATCCAAGAGCCGCTGCCTTTTCAAAGCGGAGCCAGAGCTTTATTGAGCGCAGCGTGGTGAACCGTCATTCTGAGCTTCTTTCTCCTGCTAATTCTGTAACAGCAGCAAAGCCTTATGCTTTTTCTAACTGGGGCTCACCTGATGGTAAGTTAGATTGGGCCATACATGGAGAAGAGTTGAATAAGCTGAGGAAATCTTCTTCTTTTGGATTTCGAAGCAGCACTAGTCCTTTAACTGTAGCTACAACTAGAGTGCCAACAAGTGATGATGAACCAGATGTGTCTTGGGTTCATTCCCTTGTGAAGGATGCTGTGCCTGCGCCGCAGGAATCTGGTCAGTTCGGTGTTGAGGATCAGCAGAAGCAACTGCAGTGCCACCTTAACAATGGAACAGATGTGATTCCTGCTTGGTTGGAGCAATTGTACATGGAGCAGGAGCAAATGGTGGCATAAATGCAATTTTTAAGTCTCAGTGTTGGGGTCCTTCTTGCAACTCAAAAGTTTATTTATTTGATGATTTTTTAAATTTTATAGAATTTATTTAGATGACAATTTGTTAAAGGATGGGATAATAGTACCCCTCAAAGGTAGAATATAGAAGTTGGGCGGATGCAAGTTTTCTGCTTCAGGAACTACCTCTTATTCGGGTGGTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	271993	275226	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018377.1	PF12796.2	Ank_2	102	197	7.60E-09
Glyur000169s00018377.1	PF00642.19	zf-CCCH	301	321	8.80E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.412
SRR1783600	control	5.436
SRR1783602	moderate drought stress	4.485
SRR1811619	moderate drought stress	4.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.593
DRR006520	Root Summer glycyrrhizin high producing strain	3.302
DRR006521	Root Winter glycyrrhizin high producing strain	16.978
DRR006522	Root Winter glycyrrhizin high producing strain	16.580
DRR006523	Root Summer glycyrrhizin low producing strain	7.774
DRR006524	Root Summer glycyrrhizin low producing strain	7.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.545
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.539
SRR2868004	Drought Stress (root)	30.266
SRR2967015	Control (root)	23.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.214
SRR9715740	Leaf	24.585
SRR9715741	Leaf	49.787
SRR9715739	Root	24.758
SRR9715742	Root	22.402
SRR9715743	Root	23.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.619
SRR8749028	MeJA induced 9h	31.994
SRR8749029	MeJA induced 9h	22.066
SRR8749030	Uninduced	29.436
SRR8749031	Uninduced	31.997
SRR8749032	Uninduced	44.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.448
SRR8400027	Control - Root	11.388