Gene detail information of Glyur000169s00018372 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19720.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004152769.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis sativus] |
| COG | YP_005442893.1 | 3.00E-11 | hypothetical protein CLDAP_29560 [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|Q9FXH1|PPR52_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g19720 |
| trEMBL | tr|K7KA68|K7KA68_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39241.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 224042 | 231693 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018372.1 | PF01535.15 | PPR | 124 | 148 | 8.60E-05 |
| Glyur000169s00018372.1 | PF01535.15 | PPR | 150 | 180 | 3.10E-07 |
| Glyur000169s00018372.1 | PF01535.15 | PPR | 224 | 250 | 0.0086 |
| Glyur000169s00018372.1 | PF01535.15 | PPR | 251 | 281 | 1.40E-06 |
| Glyur000169s00018372.1 | PF13041.1 | PPR_2 | 283 | 331 | 4.30E-13 |
| Glyur000169s00018372.1 | PF13041.1 | PPR_2 | 420 | 458 | 1.00E-08 |
| Glyur000169s00018372.1 | PF13041.1 | PPR_2 | 491 | 538 | 4.40E-08 |
| Glyur000169s00018372.1 | PF13041.1 | PPR_2 | 591 | 638 | 2.10E-10 |
| Glyur000169s00018372.1 | PF01419.12 | Jacalin | 861 | 983 | 3.90E-29 |
| Glyur000169s00018372.1 | PF01419.12 | Jacalin | 1100 | 1179 | 1.60E-17 |
| Glyur000169s00018372.1 | PF01419.12 | Jacalin | 1246 | 1378 | 1.10E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.155 |
| SRR1783600 | control | 1.119 |
| SRR1783602 | moderate drought stress | 1.471 |
| SRR1811619 | moderate drought stress | 1.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.104 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.086 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.078 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.468 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.597 |
| SRR2868004 | Drought Stress (root) | 30.459 |
| SRR2967015 | Control (root) | 27.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.115 |
| SRR9715740 | Leaf | 1.434 |
| SRR9715741 | Leaf | 0.785 |
| SRR9715739 | Root | 0.393 |
| SRR9715742 | Root | 2.483 |
| SRR9715743 | Root | 2.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.598 |
| SRR8749028 | MeJA induced 9h | 0.870 |
| SRR8749029 | MeJA induced 9h | 0.648 |
| SRR8749030 | Uninduced | 0.160 |
| SRR8749031 | Uninduced | 0.356 |
| SRR8749032 | Uninduced | 0.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.456 |
| SRR8400027 | Control - Root | 3.678 |