Gene detail

Gene detail information of Glyur000169s00018370

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29990.1	0	alternative NAD(P)H dehydrogenase 2
NR	XP_004490609.1	0	PREDICTED: alternative NAD(P)H dehydrogenase 2, mitochondrial-like isoform X1 [Cicer arietinum]
COG	YP_003291922.1	3.00E-59	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|O80874\|NDA2_ARATH	0	Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial (Precursor)
trEMBL	tr\|G7JZJ2\|G7JZJ2_MEDTR	0	NAD(P)H dehydrogenase B2 {ECO:0000313\|EMBL:AES98661.2}

Sequence

Transcript Sequence

>Glyur000169s00018370.1
GTCAAAGTCAAACTAAGCCAGCAGCCTACATCTTCGGAGCTTCACGATCTTCTTTCTTCCTCCTTTCTTCTTCTCATTTCTNAAACACCAATCTCACTTTTCTAACATAACATCCTCCTCCTCGTACCATGTCCTGGTTAAGAAACCTCTCCAAGTTTTCCGCCACGAAAGCAGCACCTCTCACCAGACCCACCACAACAAGTACACACCCTTTCCACCTCTTCCCACCTCTCACTCTTCTCTCTCGCTTCACCACCTCCACCGCAGAGGACAGCCCATGTCCTGCCCGGTATGCGGGCCTGGAGCCCACGAAGGCCCACGAGAAGCCCCGTGTGGTGGTGCTGGGCTCAGGTTGGGCCGGGTGCAGGCTCATGAAGGGGTTGGACCCTGAAATCTACGACGTCGTTTGCGTCTCCCCTCGCAACCACATGGTCTTCACCCCTCTCTTGGCTTCCACCTGCGTTGGAACCCTCGAGTTTAGGTCCGTTGCTGAACCCATCGCGAGGATCCAACCCGCTATTTCCAAGGAGCCCGGTTCTTACTTCTTCCTCGCCAATTGTACTGGCATCAATGCTCATAACCATGAGGTGCAATGTGAGACTGTAACTGAAGGAACACAGACACTAGATCCTTGGAAGTTTACAATCTCCTATGATAAGCTAGTAATTGCATTAGGAGCACAACCCACCACTTTTGGAATTCATGGAGTTTATGAACATGCAATTTTTCTTCGTGAAGTTCATCATGCACAGGAAATTCGTCGGAAGTTGCTCCTGAATTTGATGATGTCTGATGTTCCAGGGATATCGGAAGAGGAAAAACAAAGGCTGTTACACTGTGTGGTTGTGGGAGGTGGTCCCACTGGAGTTGAATTCAGTGGTGAACTTAGTGATTTTATTATGAGAGATGTCCGTCAGAGATATGCTCATGTGAAGGACTATATCCATGTTACTTTGATTGAGGCCAATGAGATATTGTCTTCCTTTGATGACCGACTCAGGCAATATGCCACCAAGCAATTGACAAAGTCAGGAGTCCGACTTGTTCGTGGCACTGTGAAAGATGTTGAAGATCAGAAGATTATCCTTAATGATGGTACTGAGGTTCCATATGGGTTGCTGGTATGGTCTACTGGAGTTGGTCCATCGCCTATTGTTCGCTCTTTGGATTTCCCTAAATCTCCTGGTGGAAGGATTGGCATTGATGAGTGGCTTCGTGTTCCTTCAGTACAGGATATCTTCTCAATAGGTGATTGCAGCGGATTTGTTGAGAGTACCGGAAAACCAGTACTTCCTGCTCTAGCCCAAGTGGCAGAGAGGCAAGGTAAATATTTAGCAGGCTTATTAAACAAAATAGGTAAAGCCAATGGAGGCCGTGCAAACAGCANGAAAGACATGGAGTTGGGGGATCCATTTGTTTACAAGCACCTTGGAAGCATGGCAACTGTTGGCAGTTACAAGGCTCTAGTGGACCTCAGACAGAGCAAGGAGGGAAAAGGGTTGTCCATGGCAGGTTTTGTCAGTTGGTTTATTTGGCGCTCGGCGTATCTAACGCGTGTCATTAGCTGGAGGAACAGATTCTATGTGGCTATTAACTGGGCTACAACTTTTGTGTTTGGCCGTGATATAAGCAGAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	211618	216390	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018370.1	PF07992.9	Pyr_redox_2	68	378	1.80E-30
Glyur000169s00018370.1	PF00070.22	Pyr_redox	236	310	1.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.329
SRR1783600	control	14.464
SRR1783602	moderate drought stress	12.894
SRR1811619	moderate drought stress	13.020

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.523
DRR006520	Root Summer glycyrrhizin high producing strain	4.336
DRR006521	Root Winter glycyrrhizin high producing strain	3.534
DRR006522	Root Winter glycyrrhizin high producing strain	3.367
DRR006523	Root Summer glycyrrhizin low producing strain	3.512
DRR006524	Root Summer glycyrrhizin low producing strain	3.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.636
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.724

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.898
SRR2868004	Drought Stress (root)	50.005
SRR2967015	Control (root)	42.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.265
SRR9715740	Leaf	19.841
SRR9715741	Leaf	39.768
SRR9715739	Root	7.248
SRR9715742	Root	14.503
SRR9715743	Root	15.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.389
SRR8749028	MeJA induced 9h	13.895
SRR8749029	MeJA induced 9h	8.942
SRR8749030	Uninduced	15.655
SRR8749031	Uninduced	18.530
SRR8749032	Uninduced	6.890

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.200
SRR8400027	Control - Root	29.198