Gene detail

Gene detail information of Glyur000169s00018366

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58600.1	6.00E-134	Plant protein of unknown function (DUF828)
NR	XP_003544889.2	0	PREDICTED: protein YLS7-like [Glycine max]
Swissprot	tr\|Q9LUZ6\|TBL44_ARATH	3.00E-167	Protein PMR5
trEMBL	tr\|I1MBC4\|I1MBC4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G37430.1}

Sequence

Transcript Sequence

>Glyur000169s00018366.1
CTCATGTATATCTCACATTTTTCTCAGGTATGAGGAAAAAAAAATTGCTATAATATATCACCATTATTCGAATTTACTGAACCACGTTAAAAAGTTGCATCTTAACCACGTTCATCTAACCTCACATGCACACAACAAAACAAACACCCCCTCCTCCTCCCACCACACCGTTTCTAAATTTTCTTTGAGAAGCCCCACCTCAAAACAGTTACCTTTCAATTTTTTTGGTTTCTCTCTCGATTAATTAGTGCCTTTTGGCATTCCCTGTCTTCTGTTCTGTGTTCTGTGTCAATCATGGCCTTTCTTTGCTCCCAAACTTCTTGTGGTGTTTNGGTCTCAACATTCTTCTTCTCTCTTCTTGTCCTACTTTCTCTTCAATGCCACATAGCTTCCTCTGCTCTTATGCTAAAAACGAGACATCACCACCATAACCACCAGAGAATACCCAGTAGTACTGTCCAAGCCAACAGCACTTGTGCGTTGTTCGTGGGGACTTGGGTCCATGATGAAACATACCCTCTTTACCAACCTTCTAGCTGTTCAATCATAGACCCAGAATTCAATTGCCAAATGTACGGTCGCCCAGATTCTGATTACCTCAAATACCGTTGGAAACCCCTCAATTGCGAGCTCCCCAGGTTCAATGGGGTTGAGTTTCTGCTGAATATGAAAGACAAAACCGTGATGTTCGTGGGCGACTCGCTGGGGAGGAACCAATGGCAGTCTTTGATTTGTATGCTATCTGCTGCAGCACCTCAGGCACCAACACAACTAGTCAGGGGAGATCCTCTCTCCACCTTCACATTCTTGGACTATGGTGTGAGCATTTCATTTTACAGAGCTCCTTATTTGGTGGAGGTGGATGTGGTCCAAGGGAAGAGAATTTTGAGGCTGGAAGAGGTAGATGGGAATGGTGAAGCATGGAGGAGTGCTGATGTGCTGTTGTTCAACACAGGGCATTGGTGGAGTCATCAAGGATCTCTTCAGGGGTGGGATTACGTAGAATTAAGAGGCAAATACTACCCAGACATGGATCGATTGGCAGCTTTGGAGAGGGGCATGAAAACATGGGCTACTTGGGTGGACACCAATATTGACAGAAGCAGAACCCAAGTGTTATTCCAGGCAATTTCTCCCACACACTACAACCAAAACGAATGGAATGGTGGTGGTGGTGGGACAACAGTGATGACAACAACAACAAAGAATTGCTATGGTGAAACTGCACCAATCAGTACTGTCACAACATACCCTGCAGGAGCATTATACACTGAACAGATGAGAGTAGTGGATATGGTAATCAGAGAAATGCTTAACCCTGCAAATCTTCTGGACATTACAATGTTATCAGCATTGAGGAAGGATGGGCACCCTTCCATTTACAGTGGTGAGTTGAGTCCCCAGCAGAGAGCTAACCCTGTCCACTCAGCTGATTGTAGCCATTGGTGCCTCCCTGGATTGCCTGATACTTGGAATGAGNTATTCTATGCTGCTTTATTCTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	159768	164705	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018366.1	PF14416.1	PMR5N	59	112	6.00E-22
Glyur000169s00018366.1	PF13839.1	PC-Esterase	113	401	3.20E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.964
SRR1783600	control	22.139
SRR1783602	moderate drought stress	10.537
SRR1811619	moderate drought stress	10.756

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.890
DRR006520	Root Summer glycyrrhizin high producing strain	11.616
DRR006521	Root Winter glycyrrhizin high producing strain	0.164
DRR006522	Root Winter glycyrrhizin high producing strain	0.145
DRR006523	Root Summer glycyrrhizin low producing strain	5.342
DRR006524	Root Summer glycyrrhizin low producing strain	4.982
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.399
SRR2868004	Drought Stress (root)	13.205
SRR2967015	Control (root)	12.821

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.376
SRR9715740	Leaf	0.367
SRR9715741	Leaf	0.885
SRR9715739	Root	13.195
SRR9715742	Root	15.201
SRR9715743	Root	12.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.424
SRR8749028	MeJA induced 9h	0.132
SRR8749029	MeJA induced 9h	0.381
SRR8749030	Uninduced	3.127
SRR8749031	Uninduced	9.345
SRR8749032	Uninduced	3.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.567
SRR8400027	Control - Root	28.262