Gene detail information of Glyur000169s00018362 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30020.1 | 7.00E-110 | Protein phosphatase 2C family protein |
| NR | XP_003615726.1 | 0 | Protein phosphatase 2C [Medicago truncatula] |
| COG | YP_003709340.1 | 3.00E-20 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|O80871|P2C25_ARATH | 4.00E-169 | Probable protein phosphatase 2C 25 |
| trEMBL | tr|G7JZL5|G7JZL5_MEDTR | 0 | Serine/threonine phosphatase family, 2C domain protein {ECO:0000313|EMBL:AES98684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 109835 | 112447 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018362.1 | PF00481.16 | PP2C | 136 | 378 | 6.40E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.098 |
| SRR1783600 | control | 3.005 |
| SRR1783602 | moderate drought stress | 2.804 |
| SRR1811619 | moderate drought stress | 2.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 183.868 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 181.405 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.014 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.519 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 261.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 258.572 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.398 |
| SRR2868004 | Drought Stress (root) | 57.243 |
| SRR2967015 | Control (root) | 272.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 670.997 |
| SRR9715740 | Leaf | 655.208 |
| SRR9715741 | Leaf | 776.546 |
| SRR9715739 | Root | 244.870 |
| SRR9715742 | Root | 573.090 |
| SRR9715743 | Root | 500.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 664.356 |
| SRR8749028 | MeJA induced 9h | 625.499 |
| SRR8749029 | MeJA induced 9h | 622.552 |
| SRR8749030 | Uninduced | 656.332 |
| SRR8749031 | Uninduced | 437.860 |
| SRR8749032 | Uninduced | 374.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.757 |
| SRR8400027 | Control - Root | 49.245 |