Gene detail

Gene detail information of Glyur000169s00018360.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47390.1	3.00E-107	myb-like transcription factor family protein
NR	XP_004508939.1	0	PREDICTED: transcription factor MYB1R1-like [Cicer arietinum]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	1.00E-35	Transcription factor MYB1R1
trEMBL	tr\|T2DNE9\|T2DNE9_PHAVU	0	MYB transcription factor {ECO:0000313\|EMBL:AGV54357.1}

Sequence

Transcript Sequence

>Glyur000169s00018360.1
CAACGCCCCTCTTTATCCGCGACAAGATAAATGGATAGTGTTTGCGTTGTTGGCCTCTCTCTCTTTCTCTCCCACCTGCGAAAGCCGAAGGGAGACCAAACCAAAACATTAAAAACACCAAAAAACAAAAAAAATACAAAAAAAAACACCATTCGGTCGTTGCTACTAACCTTAAAACCCCCCAATTTCATGTCTCGGATCCAGTGATTCGGATCCCCAGGACCCGCTCAATCTCCTCCTGTTCGATCCGGTTCGNAAACGCCATGACCCGGCGTTGCTCGCATTGCAGCCACAATGGCCACAACTCAAGGACCTGCCCCAACCGCGGTGTTAAGCTTTTCGGAGTCCGATTAACCGACGGGTCGATCCGAAAGAGNGCCAGTATGGGTAATCTTACCCACTATGCTGGTTCCGGGTCAGGACCCCTCCATGCCGGGTCTAATAACCCGGGTTCTCCCGGTGAAACCCCNGATCACGCCGCCGCCGCCGACGGTTACGCCTCTGAGGACTTCGTTCCTGGCTCTTCCTCTACTTCCCGTGAAAGAAAGAAGGGCATTCCGTGGACTGAGGAGGAGCATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACTCCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAACATGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCGGCTGATGCTCCAATGGTACAACAAGACTTCTTGTCGGCTAATCAGCCACAGGCTGAAACAGAAGGCAATAACCCCTTGCCTGCTCCTCCCCCACTCGATGAAGAGTGCGAATCCATGGATTCCACAAACTCAAATGATGGAGATTCTGCCTCGTTAAAGTCTGATAACAACAACAGCACCACCACACAACCGTCTTACCCGCTGGTATATCCTGCATACTACTCTCCGTTCTTCCCGTTTCCTCTTCCCTATTGGTCTGGATACAGTCCAGAGCAGCCCACTAAGAAGGAGACACATGAAGTGCTGAAGCCAACCGCAGTACACTCAAAAGCCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGCTTAGGAGACTCTATGGGCGACTCCGGCCCATCCTCTCTGTCGCGTAAACTACTTGAAGAAGGACCCTCTAGACAATCAGCTTTTCATGCAACTCCACCTTGTGACAGTTCAAATGTGAGTGGCAGTGCCATCCATGCAGTTTGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTGCCTTTGTGTTCCGAGGATGTGGTCTTGTGTTATTCATCATATATATGTGGTTGTGGGATAACCTTTTAATAATTTTTTATTTGCCCTTTCCACAGTGATTAACCACCTAGTTTGTTTCTTTGCTGGTAGGAAGTAGTAGCATCTANGAAGTATTTGGGTTCTAAAACTAAAACTTTTTTATGTTTGTTCAGTAATTTCATTTCTCAGGGTCATGTAAAGTTGATTGTGCAGTTTGACAATCTACCAACTTGTGCTTCCTACTATTTTTATGTGCTGGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	96570	100018	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018360.1	PF00249.26	Myb_DNA-binding	99	143	1.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	127.817
SRR1783600	control	128.058
SRR1783602	moderate drought stress	244.142
SRR1811619	moderate drought stress	242.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.237
DRR006520	Root Summer glycyrrhizin high producing strain	103.191
DRR006521	Root Winter glycyrrhizin high producing strain	95.868
DRR006522	Root Winter glycyrrhizin high producing strain	92.336
DRR006523	Root Summer glycyrrhizin low producing strain	163.716
DRR006524	Root Summer glycyrrhizin low producing strain	164.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.843
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	95.299
SRR2868004	Drought Stress (root)	134.660
SRR2967015	Control (root)	211.725

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	82.573
SRR9715740	Leaf	85.723
SRR9715741	Leaf	124.185
SRR9715739	Root	99.372
SRR9715742	Root	115.818
SRR9715743	Root	113.171

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.679
SRR8749028	MeJA induced 9h	75.025
SRR8749029	MeJA induced 9h	75.380
SRR8749030	Uninduced	99.266
SRR8749031	Uninduced	132.891
SRR8749032	Uninduced	121.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	84.383
SRR8400027	Control - Root	81.878