Gene detail

Gene detail information of Glyur000169s00018357

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16770.1	2.00E-73	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003608679.1	2.34E-179	Gibberellin 2-beta-dioxygenase [Medicago truncatula]
COG	YP_004303697.1	5.00E-52	2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|F4K7D5\|FLS6_ARATH	2.00E-28	Probable flavonol synthase 6
trEMBL	tr\|G7JHQ5\|G7JHQ5_MEDTR	9.00E-180	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:AES90876.1}

Sequence

Transcript Sequence

>Glyur000169s00018357.1
ATGGAAAAGCCAAGCTGCAGCGATTATTTATCATCCGAAGTTGAATTGGAAATTGAAGTTGAACAGAGAGAAAGCAAAGTAGAGAAGGAAATGGTGGCGACACTGACTCTTCCTATCATAGACCTCTCCTCACCCGATCGTCTTTCCACAGCCACTTCCATCCGTCAGGCATGCATTGAGCATGGTTTCTTTTACCTTGTGAACCACGGGGTGGACGAGGACTTTGTGAGGGAAGTGTTCCACCACAGTGCCAACTTCTTCTCACTTCCACTCCAACACAAAATGAACTTGGCTCGCAAGGAATACAGAGGTTATACTCCTCTCTATGCCGAGAAACTTGATCCCACTTCACAAACCAAAGGTGATCCAAAAGAGACCTATTACATTGGCTCTATAGCAGATGCCACTAGTGCTCATCTGAATCAATGGCCTTCCGAGGCTGGAAGAGAGCTACTGTCTCTAATTGCCCTGTCCTTGAGTCTGGATGAAGATTACTTTGAGAAGATAGGCCCCGTAAACAAACCAGAAGCTTTTCTTCGCCTTTTGCGCTATCCAGGTGAATTGGGATCTCATGAAGGGTTATGTGGTGCCTCTCCTCACTCAGATTTTGGCATGATCACTCTCCTATTGACCAACGGTGTTCCAGGACTGCAGATCTGCAAGGAGAAGTTCAAGCAACCTCAAGTCTGGGAGGATGTGCCTCATGTAGAAGGGGCCTTAATTGTGAACATCGGGGACATGATGGAGAGGTGGACAAATTGTGTGTACCGGTCAACACTTCACAGGGTTATGCCAACAGGAAAAGAACGCTATTCTGTGGCATTCTTCTTGGACGCGCCCTCGGACTGTGTAGTGGAATGCTTTGAGAGTTGCTGCAGCGAATCATCTCCCCCCAGATTCCCTCCAATACGAAGTGGGGACTACTTGAATGAGCGGTTCAGGCTCATATATGGTTCTGAAAGGGATCTAAAATAATGCTCCATCCATCCAGTCAAAGAAATAAAGGCTGTACGGGCTACAAACAAATTGAAAATATGTGGAGTGTGCGCAGGCTAATCAGAAAACTCTGCTTCAATTTAAATTAATTTGCAAAATGTGATCTATGACTGTTGGTTGTTGCAATTGCCATATCTATCTCGTCTATTATTAATGTTTTTGCTGTTGGTATATTATTATTGTTAGTATAAATTAAAACTGAAACATATATTAATTAAGCCGCAACTAAGCTAACAAGTAATTACTTACATTGCGCCAGAGCACAATTTTCAGGGCAAAACTCTATTTTGTTCCTTGAAAAAGTGCATCGTTTATCTGGTTCCTTATGGTGACCATGGCTTCCTTGGAATGAAAGGAAAAGAAAGAAAAAAAAAAGACCAACATGACAAGATATATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	85946	93333	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018357.1	PF14226.1	DIOX_N	37	146	7.30E-30
Glyur000169s00018357.1	PF03171.15	2OG-FeII_Oxy	179	277	5.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	297.017
SRR1783600	control	299.079
SRR1783602	moderate drought stress	138.794
SRR1811619	moderate drought stress	138.054

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	100.222
DRR006520	Root Summer glycyrrhizin high producing strain	98.373
DRR006521	Root Winter glycyrrhizin high producing strain	0.843
DRR006522	Root Winter glycyrrhizin high producing strain	0.966
DRR006523	Root Summer glycyrrhizin low producing strain	8.259
DRR006524	Root Summer glycyrrhizin low producing strain	8.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.856
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	242.456
SRR2868004	Drought Stress (root)	153.147
SRR2967015	Control (root)	212.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.062
SRR9715740	Leaf	1.671
SRR9715741	Leaf	4.661
SRR9715739	Root	159.232
SRR9715742	Root	168.049
SRR9715743	Root	158.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.203
SRR8749028	MeJA induced 9h	0.415
SRR8749029	MeJA induced 9h	1.302
SRR8749030	Uninduced	1.635
SRR8749031	Uninduced	1.334
SRR8749032	Uninduced	1.627

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	383.813
SRR8400027	Control - Root	368.116