Gene detail

Gene detail information of Glyur000169s00018354

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39730.1	0	rubisco activase
NR	KHN41111.1	0	Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic [Glycine soja]
COG	YP_007111326.1	1.00E-132	ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q7X9A0\|RCA1_LARTR	0	Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic (Precursor)
trEMBL	tr\|I1M841\|I1M841_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07270.1}

Sequence

Transcript Sequence

>Glyur000169s00018354.1
AAGAGACCAGACACTAATTTGGTTGCACAAATTAACATCTCTTTCTCTGCAACTCCATCCGAGGACAACACAGCAATGGCTGCTGCCTCAGTCTCCACTGTGGGAGCTGTCAACAGAACTCCACTGAGCTTGAATAGATCTGTAGCTGGAGCTTCAGTTCCCACTTCATCCTTCTTTGGCACCAGCTTGAAGAAGGTTACTTCAAGGCTCCCCAACACCAAGGTTAATTCCAATGGAAGTTTCAAAATCGTTGCGCAAGAGATCGATGAGAGCGAGCAGACCGACAAGGACAGATGGAAGGGTTTGGCCTATGATATCTCAGATGACCAACAAGACATCACAAGGGGAAAGGGTTTGGTTGATTCCCTTTTCCAAGCTCCACAAGATGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTTAGTACTGGACTTAGACAGTACAACTTGGACAACACCATGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGCATGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAATTGGAAAGTGGGAATGCAGGGGAGCCAGCAAAACTGATAAGGCAAAGATACCGTGAAGCTGCTGATATAATAAAGAAGGGAAAAATGTGTTGTCTGTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACACAGTACACTGTGAACAACCAGATGGTGAATGCCACACTCATGAACATTGCTGATAACCCTACAAATGTGCAGCTACCTGGTATGTACAACAAGGAAGAGAACCCTCGTGTGCCAATCATTGTCACTGGTAACGATTTCTCAACATTGTATGCTCCTCTCATTCGTGACGGGCGTATGGAGAAGTTCTACTGGGCACCTACAAGGGATGACCGAGTTGGTGTCTGCAAGGGAATTTTCAGGAGTGACAATGTACCTGATGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCTAGAGTATATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGAAGTGATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGACCAGCCCAAGATGACTTTGGAGAAACTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACTTGAGTGAAGCTGCTCTTGGTGATGCTAACGAAGATTCCATCAACAGAGGAACTTTCTATGGCAAAGCAGCCCAACAAATAAATGTTCCTGTTCCTGAAGGTTGTACCGANCCAAATGCCTCAAACTTTGACCCAACTGCTAGAAGTGACGATGGAACCTGCTTATACACATTCTAAGAATCTAAGCATTCTTCACCTATTAGGTGAATGGAGGAGAAGCTTATAAGACTTGAGATAATCGAGTAATTTTATTTGTTATCTTGTTTATATTGGATTGTTATCCTCTATAGTTTTGAGATGTGTTGTGCACAATGTTAATCGAATTGGTTGCGAATTGGTTGCCTTTCTCTTTTTGACCATGCAATGATTGTCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00169	57783	61971	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000169s00018354.1	PF00004.24	AAA	162	299	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.270
SRR1783600	control	0.253
SRR1783602	moderate drought stress	0.187
SRR1811619	moderate drought stress	0.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.640
DRR006520	Root Summer glycyrrhizin high producing strain	0.637
DRR006521	Root Winter glycyrrhizin high producing strain	0.594
DRR006522	Root Winter glycyrrhizin high producing strain	0.606
DRR006523	Root Summer glycyrrhizin low producing strain	0.262
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	1884.628
DRR006526	Leaf Summer glycyrrhizin high producing strain	1849.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.460
SRR2868004	Drought Stress (root)	37.508
SRR2967015	Control (root)	6.525

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1698.960
SRR9715740	Leaf	2005.979
SRR9715741	Leaf	1873.205
SRR9715739	Root	0.780
SRR9715742	Root	2.445
SRR9715743	Root	2.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.514
SRR8749028	MeJA induced 9h	4.519
SRR8749029	MeJA induced 9h	1.838
SRR8749030	Uninduced	0.076
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.280
SRR8400027	Control - Root	5.491