Gene detail information of Glyur000169s00018351.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06080.1 | 3.00E-44 | LOB domain-containing protein 33 |
| NR | XP_007141403.1 | 9.43E-118 | hypothetical protein PHAVU_008G192500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LHS8|LBD33_ARATH | 4.00E-54 | LOB domain-containing protein 33 |
| trEMBL | tr|V7B661|V7B661_PHAVU | 4.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW13397.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 52713 | 53708 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018351.1 | PF03195.9 | DUF260 | 8 | 105 | 2.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.110 |
| SRR1783600 | control | 0.119 |
| SRR1783602 | moderate drought stress | 0.570 |
| SRR1811619 | moderate drought stress | 0.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.637 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.603 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.195 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.128 |
| SRR2868004 | Drought Stress (root) | 0.001 |
| SRR2967015 | Control (root) | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.003 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.099 |
| SRR9715739 | Root | 0.187 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.702 |
| SRR8749028 | MeJA induced 9h | 5.259 |
| SRR8749029 | MeJA induced 9h | 2.156 |
| SRR8749030 | Uninduced | 0.329 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.330 |
| SRR8400027 | Control - Root | 1.947 |