Gene detail information of Glyur000169s00018349 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14465.1 | 4.00E-48 | AT-hook motif nuclear-localized protein 20 |
| NR | XP_007009270.1 | 2.01E-86 | AT-hook protein of GA feedback 2 [Theobroma cacao] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 5.00E-47 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|A0A061FL84|A0A061FL84_THECC | 8.00E-87 | AT-hook protein of GA feedback 2 {ECO:0000313|EMBL:EOY18080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 39300 | 40727 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018349.1 | PF03479.10 | DUF296 | 102 | 218 | 9.10E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.118 |
| SRR1783600 | control | 24.108 |
| SRR1783602 | moderate drought stress | 20.729 |
| SRR1811619 | moderate drought stress | 20.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.322 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.837 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.541 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.185 |
| SRR2868004 | Drought Stress (root) | 13.747 |
| SRR2967015 | Control (root) | 22.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 178.028 |
| SRR9715740 | Leaf | 48.257 |
| SRR9715741 | Leaf | 103.145 |
| SRR9715739 | Root | 213.009 |
| SRR9715742 | Root | 353.077 |
| SRR9715743 | Root | 333.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.268 |
| SRR8749028 | MeJA induced 9h | 9.354 |
| SRR8749029 | MeJA induced 9h | 6.498 |
| SRR8749030 | Uninduced | 22.174 |
| SRR8749031 | Uninduced | 3.042 |
| SRR8749032 | Uninduced | 5.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.651 |
| SRR8400027 | Control - Root | 70.831 |