Gene detail information of Glyur000168s00018574 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00755.2 | 2.00E-69 | F-box family protein |
| NR | XP_003549121.1 | 0 | PREDICTED: F-box protein At4g00755-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LG03|FB345_ARATH | 1.00E-94 | F-box protein At4g00755 |
| trEMBL | tr|K7MIL9|K7MIL9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G32236.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00168 | 196387 | 202970 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000168s00018574.1 | PF12937.2 | F-box-like | 17 | 58 | 1.20E-05 |
| Glyur000168s00018574.2 | PF12937.2 | F-box-like | 62 | 103 | 1.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.827 |
| SRR1783600 | control | 9.684 |
| SRR1783602 | moderate drought stress | 10.266 |
| SRR1811619 | moderate drought stress | 10.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.323 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.720 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.456 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.923 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.595 |
| SRR2868004 | Drought Stress (root) | 16.637 |
| SRR2967015 | Control (root) | 24.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.310 |
| SRR9715740 | Leaf | 9.085 |
| SRR9715741 | Leaf | 7.770 |
| SRR9715739 | Root | 8.605 |
| SRR9715742 | Root | 12.342 |
| SRR9715743 | Root | 12.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.278 |
| SRR8749028 | MeJA induced 9h | 24.964 |
| SRR8749029 | MeJA induced 9h | 35.671 |
| SRR8749030 | Uninduced | 12.849 |
| SRR8749031 | Uninduced | 41.104 |
| SRR8749032 | Uninduced | 52.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.126 |
| SRR8400027 | Control - Root | 14.759 |