Gene detail information of Glyur000168s00018573.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61060.1 | 3.00E-41 | phloem protein 2-A13 |
| NR | XP_006587355.1 | 7.82E-75 | PREDICTED: F-box protein PP2-A13-like [Glycine max] |
| Swissprot | tr|Q9LEX0|P2A13_ARATH | 2.00E-50 | F-box protein PP2-A13 |
| trEMBL | tr|I1L3D1|I1L3D1_SOYBN | 3.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G26940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00168 | 188909 | 189969 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.599 |
| SRR1783600 | control | 4.780 |
| SRR1783602 | moderate drought stress | 10.510 |
| SRR1811619 | moderate drought stress | 10.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.067 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.144 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.702 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.766 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.484 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.309 |
| SRR2868004 | Drought Stress (root) | 32.753 |
| SRR2967015 | Control (root) | 57.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.364 |
| SRR9715740 | Leaf | 0.411 |
| SRR9715741 | Leaf | 0.802 |
| SRR9715739 | Root | 9.482 |
| SRR9715742 | Root | 9.238 |
| SRR9715743 | Root | 6.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.047 |
| SRR8749028 | MeJA induced 9h | 0.986 |
| SRR8749029 | MeJA induced 9h | 0.813 |
| SRR8749030 | Uninduced | 1.312 |
| SRR8749031 | Uninduced | 7.873 |
| SRR8749032 | Uninduced | 5.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.949 |
| SRR8400027 | Control - Root | 18.743 |