Gene detail

Gene detail information of Glyur000168s00018566

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06620.1	3.00E-96	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003548216.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like isoform X1 [Glycine max]
COG	YP_553500.1	8.00E-31	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q84MB3\|ACCH1_ARATH	7.00E-130	1-aminocyclopropane-1-carboxylate oxidase homolog 1
trEMBL	tr\|K7MIL7\|K7MIL7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G32203.1}

Sequence

Transcript Sequence

>Glyur000168s00018566.1
CGAAATAAAAGAAAACACAGGATAGAGGTTGCATTAGAGAGCTAAGCTTGTNGTTGTAGTTCCCTGCAAATGGATGTCGCCGGCGCCGGAAAATCTTTCGCCGGAAGTTCCACAACCTACGACCGTTTTCAAGAACTGAAGGCCTTCGATGAATCCAAAGCTGGCGTCAAAGGTCTTGTTGACTCCGGCATCACCAAACTTCCGCGAATTTTCCTCATGCCACCGGAAGATCTCGCCGCCGCCTGCGTTCNATTTTCCGGCCATTCGGCACCGACCCAGTTCAGGATTCCCGTGATTGACCTCAAAGACATCGCCGGGGATCGCCCCGGCGCTGTCGCCGGAGTCCGAAAGGCGGCGGAAACGGTGGGGTTTTTCCAGGTGGTGAATCACGGGATCCCCGTGACACTGCTNGAGGAGATGCTGGCGGTGGCGCGTGAGTTCCACGAGCTGCCGCGAGAGTTGAAGGCTGAGTATTTTAGCAGGGAGGTGATGAAGAAGGTGAAGTTTGGGAGCAACTTTGATTTGTATCAGTCAAAATATGCTAACTGGAGGGACTCACTGTTTTGTGTGATGGGTCCTGAACCTCTTGATCCACAAGAATTGCCTCCTGTGTGTAGGGATGTAACAATGGAATACTCTAGGCAAGTTCAGGTATTGGGGAGCCTTTTATTTGAATTATTATCAGAAGCACTTGGACTCAAGCCTGACCATCTTGAAGGCATGGATTGTGCAAAAGGTCACTCAATTCTTAGCCACTATTATCCAGCATGTCCTGAGCCTGAACTCACTATGGGCACTACCAAACACTCTGATCCTGATTTCCTTACAATTCTTCTTCAAGATCAAATTGGTGGGCTCCAAGTTTTGAGCCATGATGGGTGGGTTGATGTTCCACCTGTTCCTGGAGCTCTGGTAGTAAACATTGGAGATCTGCTACAGCTAATATCCAACGACAGATTCAAAAGCGTGGAGCACCGTGTGCTGGCAAACCATAAAGGGCCCAGAGTATCAGTGGCATGCTTTTTCACTCTTCATCTCTACCCAACAACAAGNATGTATGGCCCCATCAAGGAACTATTGTCAGAAGATAACCCCCCAAAAGCATCTGTAACTGGAATTTCAGCGGCGTGCGTGATCAGGTAGCACCTTTCACCCGAAAATTCAATACCNTATGAAAGACCTGCATACAATGAGGGAGTTGCTAACAGGGGAAAATCCTCTGGTTTACAAGGAAGGAATTACCACTGTTCAAGACTTCATGGAAGACTATTATGCCAAAAGCTAAATGGTATTTCTGCAGTCTGCACCACAACACCTCAAGTTGNACTCTCACTTGAATCTTAAACTTAATACAGCAAGAAATCTGGCATGTCATGTTGGCTGTCTCGAATCGAATCTCGGTCTAATGAGTCTAAATTCCTTTCTGTATGCAAATGGTATTTGGTGTAAACTGTAAAAAGCAGTCATGGATTAAATTGTAATGATCAAATTTGTGCAGTATCATCTGAATTTTTCTGATTATTGAAATGCAGATGTTTAGTAGTAGTTGAGAGGATTCAATGGCCAAAATTGATGGAAGAGCCTAAACTTGACATATAAACCTCTTTTCTGTTTTATTTTTTGGGATACTAGCTAATTAGTATGTGGCAAAAACATCCCTCATGTTGCAATGACTTGTATTACCATAAGCATATGCATTTTATGGGAACCTTCGTTGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00168	112968	117083	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000168s00018566.1	PF14226.1	DIOX_N	73	169	4.00E-20
Glyur000168s00018566.1	PF03171.15	2OG-FeII_Oxy	224	319	3.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.371
SRR1783600	control	7.429
SRR1783602	moderate drought stress	4.967
SRR1811619	moderate drought stress	4.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.618
DRR006520	Root Summer glycyrrhizin high producing strain	9.654
DRR006521	Root Winter glycyrrhizin high producing strain	5.562
DRR006522	Root Winter glycyrrhizin high producing strain	5.122
DRR006523	Root Summer glycyrrhizin low producing strain	9.533
DRR006524	Root Summer glycyrrhizin low producing strain	9.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.484

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.934
SRR2868004	Drought Stress (root)	10.532
SRR2967015	Control (root)	16.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.151
SRR9715740	Leaf	28.155
SRR9715741	Leaf	25.617
SRR9715739	Root	4.277
SRR9715742	Root	7.282
SRR9715743	Root	5.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.060
SRR8749028	MeJA induced 9h	11.489
SRR8749029	MeJA induced 9h	10.280
SRR8749030	Uninduced	8.856
SRR8749031	Uninduced	11.354
SRR8749032	Uninduced	15.322

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.766
SRR8400027	Control - Root	8.512