Gene detail information of Glyur000167s00012292 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21090.1 | 8.00E-152 | ABC-2 type transporter family protein |
| NR | KCW51149.1 | 0 | hypothetical protein EUGRSUZ_J00745 [Eucalyptus grandis] |
| COG | YP_001510947.1 | 1.00E-35 | serine/threonine kinase protein [Frankia sp. EAN1pec] |
| Swissprot | tr|Q9C8K2|AB12G_ARATH | 0 | ABC transporter G family member 12 |
| trEMBL | tr|A0A059ABM9|A0A059ABM9_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW51149.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 258595 | 266738 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000167s00012292.1 | PF00005.22 | ABC_tran | 67 | 212 | 1.20E-18 |
| Glyur000167s00012292.1 | PF01061.19 | ABC2_membrane | 356 | 466 | 5.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.069 |
| SRR1783600 | control | 0.074 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.181 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.008 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.509 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.189 |
| SRR2868004 | Drought Stress (root) | 0.312 |
| SRR2967015 | Control (root) | 0.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.810 |
| SRR9715740 | Leaf | 32.777 |
| SRR9715741 | Leaf | 29.778 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.367 |
| SRR9715743 | Root | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.119 |
| SRR8749028 | MeJA induced 9h | 0.174 |
| SRR8749029 | MeJA induced 9h | 0.124 |
| SRR8749030 | Uninduced | 0.083 |
| SRR8749031 | Uninduced | 0.002 |
| SRR8749032 | Uninduced | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.544 |
| SRR8400027 | Control - Root | 2.455 |