Gene detail

Gene detail information of Glyur000167s00012290.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43360.1	3.00E-175	Radical SAM superfamily protein
NR	XP_003537735.1	0	PREDICTED: biotin synthase-like [Glycine max]
COG	YP_006433483.1	1.00E-152	biotin synthase [Flexibacter litoralis DSM 6794]
Swissprot	tr\|P54967\|BIOB_ARATH	0	Biotin synthase
trEMBL	tr\|I1LIK7\|I1LIK7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09980.1}

Sequence

Transcript Sequence

>Glyur000167s00012290.1
GGCCAAATAAGAACACCAAAGTCCCAAAGCAAAAATGAAACCGAAACTCAACACAACAACCGAAGAGTCCACCAACCCACTACCCTTCCCTTCACTTCACTGCCTTTTCGAGGAAAACGATGATGATATTCGCAGATCTAGGAAGCAGTTAAGTCCTCACTCTCTCACGTTCAACGTTACACCGTCCCACATTCTCTGTGTTCTGTCTGAGCCACCAACCATCGACACTTTTTTTTCAGATTGAAGAGTGCCCCAATTTTGAATNGAAAAAAAAAATCATGTTTTTGGTGAGACCCATTTTCAGAACACAGTCAAGACCCTCCTCCCATTGGGTGGTTCATTCTTCCTCCTATGGATATGGATATTACAGTTCCTCTTCTTCTTCCTCAGCAGCTTCAATTCAAGCTGAGAGGACCATCAAAGAAGGCCCCAGAAACAATTGGACACGAGATGAAGTCAAATCCATCTACGACTCTCCCANTCTCGATCTTCTCTTCCATGGGGCTCAAGTTCACAGACATGCCCATAACTTCAGGGAAGTGCAGCAGTGTACTCTTCTCTCTGTCAAAACAGGTGGGTGTAGTGAAGATTGTTCCTATTGTCCTCAGTCCTCTAGATATGATACAGGACTCAAAGGTCAAAGACTTATGAACAAGGATGCTGTTATCCAGGCTGCAAAAAAGGCAAAAGAAGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCATGGAGGGATACAGTAGGAAGAAAAACCAATTTCAACCAGATCCTTGACTATGTAAAAGAAATAAAGGATATGGGGATGGAGGTGTGTTGCACCCTTGGCATGCTGGAGAAACAGCAGGCTCTTGAACTCAAGAAGGCAGGTCTTACTGCATATAATCACAATCTTGACACCTCAAGGGAATACTATCCAAACATCATCACAACAAGGTCTTACGATGAGCGCCTACAGACCCTTGAGTTTGTTCGTGATGCTGGGATTAATGTTTGTTCTGGAGGAATTATAGGGCTTGGAGAAGCAGAGGAAGACCGTGTAGGTTTGTTACATACGTTATCAACACTTCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTGTTGCTGTAAAGGGAACCCCTCTTCAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGCGACGGCNCGTATCGTAATGCCGAAAGCAATGGTCAGGTTATCGGCTGGCAGAGTGCGGTTCTCGATGCCCGAGCAGGCNCTGTGCTTTCTTGCTGGTGCAAATTCCATCTTCACTGGTGAAAGGCTTCTCACTACTCCCAATAATGACTTTGANGCTGATCAACTCATGTTTAAAGTTCTTGGACTGCTCCCAAAACCTCCTACCTTACATGAAGGTGAAAAGGCTGAGGATTATAAAGAAGCTGCTTCTTCTAGTTGAGTAGTTTGTCAACAATTTCAGCTAATATCTGTGAACCTTTTCCCTGATAAACACTGGATGTTNGGTGTAAGTGAATTTGCCTTTTCTCAGCTCTGAAGACAAATTCCCAACAATTAAGCATAAATGTTGAAAATAATTATTTTTCAATAACTTGGCTTGTACAAGCTTTAGATTCTACAATTCCCCGAATAAATGTTTGCATCATTGTCTTATCATTTTAGAACTTTGTGCTTTTTCTTTTTTTGTATCGCCCTTTTGCGTCTGGTTCACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	243772	248224	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01012	bioB	EC:2.8.1.6	Biotin metabolism	map00780

Gene Ontology

biological_process
GO:0009102 biotin biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004076 biotin synthase activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012290.1	PF04055.16	Radical_SAM	97	255	7.90E-15
Glyur000167s00012290.1	PF06968.8	BATS	270	362	5.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.591
SRR1783600	control	72.577
SRR1783602	moderate drought stress	40.043
SRR1811619	moderate drought stress	40.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.237
DRR006520	Root Summer glycyrrhizin high producing strain	31.024
DRR006521	Root Winter glycyrrhizin high producing strain	40.819
DRR006522	Root Winter glycyrrhizin high producing strain	40.014
DRR006523	Root Summer glycyrrhizin low producing strain	22.414
DRR006524	Root Summer glycyrrhizin low producing strain	22.609
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.085
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.779

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.392
SRR2868004	Drought Stress (root)	64.115
SRR2967015	Control (root)	60.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.612
SRR9715740	Leaf	29.766
SRR9715741	Leaf	34.461
SRR9715739	Root	21.501
SRR9715742	Root	34.812
SRR9715743	Root	31.932

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.624
SRR8749028	MeJA induced 9h	82.343
SRR8749029	MeJA induced 9h	33.836
SRR8749030	Uninduced	72.295
SRR8749031	Uninduced	32.072
SRR8749032	Uninduced	29.941

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.169
SRR8400027	Control - Root	64.833