Gene detail

Gene detail information of Glyur000167s00012289.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10320.1	0	tRNA synthetase class I (I, L, M and V) family protein
NR	XP_004505648.1	0	PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COG	NP_969094.1	0	isoleucyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|P93736\|SYV_ARATH	1.00E-25	Valine--tRNA ligase
trEMBL	tr\|I1LPC3\|I1LPC3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G02330.1}

Sequence

Transcript Sequence

>Glyur000167s00012289.1
TGCAAAACTAGTAGTGATAGTAGGAGTTCACAGCTTCTATGCGGCTGTCACTAACTGTGCTTCCCTTCTCTTCCTTCGGTTGTTCCAATCCAAATCCATAGCTACAATCCAACAATCGGAGTGAAAGGGGAAACAAACATCAGCATCAACAAATTCAACAAAATGGAAGAGGTTTGCGAGGGCAAGGACTTCGCGTTCCCGAAGCAGGAGGAGAACATTCTAGAACTCTGGTCCAAAATCGACGCCTTCCACACTCAGCTCTCTCTCACTAAGGACAAGCCAGAGTACATCTTCTACGACGGCCCTCCCTTCGCCACCGGTCTCCCTCACTACGGCCACATCCTCGCCGGCACAATCAAGGACATNGTCACGCGCTACCACTCCATGACCGGTCACCACGTCACGCGCCGCTTCGGTTGGGACTGCCACGGCCTCCCCGTCGAGAACGAGATCGACAAGAAGCTCGGCATCAAGAAGCGCGAGGACGTACTCAAGCTAGGGATCGGCGTCTACAACGAGGAGTGCAGGAGTATCGTCACGCGCTACGTCAACGAGTGGGAGACTGTCATTACTCGCACTGGACGCTGGATCGACTTCAGAAATGATTACAAGACCATGGACCTGAACTTCATGGAGTCCGTTTGGTGGGTCATGCCCTATAGCACAGGCTGCAAAACCCCGCTCTCTAATTTTGAGGCTGGTCAGAATTATAAGGATGTGTCCGATCCTGAAGTGCTGATGACGTTTCCGGTGCGCAATAAGTATTCAGGCAAAGTTTATGTAGTTGCTGAATCTCGTCTGTCTACACTCCATAACCCAAAGGANAAACCCAAAGAGGCTGCCGCTAATAGTTCAGTTGATCATGCCCCTAAAAATACAAATGCAAAGAACAAGGGATCTTCAGGTGGAAAGGCTGAAAATGTGTTGGATTATTTTGAAGTGCTGGAGAAATTCTCAGGGGCTTCGTTAGTGGGGATGAAGTATGAACCATTATTTGATTACTTTATAGAGTTATCTGATACAGCTTTTAGAGTTGTTTCCGACAATTATGTTACTGATGATAGTGGTACTGGCATTGTCCATTGTGCCCCTGCTTTTGGTGAAGATGATTTTCGTGTCTGCATTGACAATCAAATTATTAGCAAGGATAAGCTAACCGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATTACTGACTTTAGTGGGCGCTATATCAAACAAGCTGACAAGGATATCATTGAAGCAGTGAAGGCAAAGGGTAGGCTGGTTAGATCTGGAGCTTTTACACATTCTTATCCATNTTGTTGGAGATCTGATACACCTCTCATTTACAGAGCTGTTCCAAGCTGGTTTGTCAGAGTGGAGTTGCTGAAAGAGCAATTGTTGGAAAACAATAAGCAGACTTACTGGGTCCCTGATTTTGTCAAGGATAAGCGATTTCACAATTGGCTAGAAAATGCAAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGGACCCCTCTCCCTATTTGGATTAGTGAGGATGAGAAAGAAATAGTTGTCATAGATTCTGTTGCAAAACTTGAAAAGCTCTCTGGTGTAAAGGTGTTTGACCTTCATCGCCACAACATTGATCATATTACAATTCAATCTGAAAGTGGTCGTGTGCTCCGACGTGTTGATGATGTGTTTGACTGCTGGTTTGAAAGTGGATCCATGCCTTATGCATATATCCATTATCCTTTTGAAAATGTTGAGCTGTTTGAGAAGAACTTTCCTGGACATTTTGTTGCCGAAGGGCTGGATCAAACCCGTGGATGGTTTTATACCCTAATGGTGCTGTCTACTGCATTATTTGGTAAGCCTGCCTTTAGGAATCTAATTTGCAATGGGCTTGTCCTGGCTGAAGATGGGAAAAAGATGAGCAAAAGCTTGAAAAATTATCCTTCACCAATGGAAGTTATTAATGATTATGGAGCGGATGCCTTGCGATTGTACCTTATAAACTCTCCTGTTGTGCGTGCTGAGCCACTTCGTTTCAAGAAGGACGGAGTTTATGGTGTTGTTAGGGATGTTTTCCTTCCCTGGTATAATGCATATAGGTTCCTTGTTCAAAATGCAAAGAGGCTTGAAGTNGAGGGTCTAGCACCTTTTGTCCCTTTTGATCAGGCCACACTTCAGAAGTCATCAAATGTTCTTGATCAGTGGATCAACTCAGCCACACAAAGCCTTGTTCATTTTGTCCGGCAAGAAATGGATGGTTACCGCCTTTATACGGTGGTTCCATATCTTCTAAAATTTCTTGATAACCTCACAAATATATATGTACGGTTCAACCGTAAGAGACTGAAAGGTCGTACTGGAGAAGAAGACTGCAGGACAGCACTTTCAACTCTTTACAATGTGCTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTCTTCACTGAGGTACTCTATCAAAATTTGCGAAAAGTTTGTCATGGATCAGAGGAAAGCATACACTATTGCAGTTTTCCTAANGAAGAAGGCAAGAGGGGAGAACGGATTGAGCAAAGTGTTTCAAGAATGATGACAATAATTGATCTGGCCCGAAACATTCGTGAGCGTCATAACAAGCCTCTTAAAACTCCACTCAGGGAAATGGTGATAGTGCATCCTGATGCAGACTTCCTTGATGACATAAATGGAAAGTTGAGGGAGGTACTTGCNTGATATCACCAGCAGTTACAGTTTCCCCCTTTATGTGCTGGAGGAACTCAATATACGATCCCTTGTTCCATGTAATGATACTTTGAAGTATGCATCTCTACGTGCCGAGCCTGATTTTAGTATTTTAGGTAAAAGACTTGGAAGATCTATGGGCATTGTTGCCAAAGAAGTCAAAGCCATGTCACAGGAAAAGATTTTGGCTTTTGAGAATGCTGGAGAAGTCACCATTGCAAATCACTGTTTGAAGCTGTCTGATATTAAGGTTCTCCGTGATTTTAAACGACCTGATGGTATGACTGAGAAGGAGATCGATGCTGCTGGAGATGGTGATGTTTTAGTGATATTGGACTTGCGTCCTGATGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTTAACAGAATTCAGAAGTTGCGAAAGAAAGTTGNTCTTGAACCGACTGACACAGTGGAGGTTTACTTTCAATCATTGGATGATGATAAATCAATCTCTCAAAGAGTTTTGCATTCACAGGAATCCTATATCAGAGATGCTATTGGCTCTCCGTTGCTTCAATATTCTTTGATGCCTGCACATGCAGTTGTCATTGGTGAAGAAAGGTTCCAAGGAATTTCCAGCATGTCGTTTGGCATCACTTTGACGAGACCGGCATTGATGTTCAACACAAAGGGCACTCTTTCACTGTTTACAGTGGCTACAGGTGACACCAAATTTGCACATAATTTGCAAACTTACCTTCTATCAAGAGATCATTCAAATTTGAAGTCCGAGTTTCAAGATGGAAATGGAAAGAAAATCGTAGACTCAATTGAACAGCAACCTGCAGTGGAAGTGGTTCTCGGTGAGCATGTATTTCTCACTGTAGGGGATTACTACCTTGCTACAAGATCTGACTAATTTAGTTTTTTTTTTATCGATCTGACTAATTTAGCTCAAGAGCTCCTTTTTTATTTTCTTTTCAATGAGTTGATATTGTATCTGGTTGCAAGATTAGAAACACATAATGTTATACCAAGGCCTGCCTAACGTTAACGGGCGGGGCAATTGAAATCATTATTCATTTTTCTGTAATCTGTATAGAAGAACTCACATCTTATTTAAAGATGGACAATTTTCTGAATGGAATCCTNGATGATATAATGTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	225945	242676	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01870	IARS, ileS	EC:6.1.1.5	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006428 isoleucyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0002161 aminoacyl-tRNA editing activity

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004822 isoleucine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012289.1	PF00133.17	tRNA-synt_1	19	618	1.30E-184
Glyur000167s00012289.1	PF08264.8	Anticodon_1	676	824	2.20E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.258
SRR1783600	control	18.375
SRR1783602	moderate drought stress	18.672
SRR1811619	moderate drought stress	18.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.139
DRR006520	Root Summer glycyrrhizin high producing strain	19.824
DRR006521	Root Winter glycyrrhizin high producing strain	14.150
DRR006522	Root Winter glycyrrhizin high producing strain	13.827
DRR006523	Root Summer glycyrrhizin low producing strain	20.564
DRR006524	Root Summer glycyrrhizin low producing strain	20.498
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.401
SRR2868004	Drought Stress (root)	38.674
SRR2967015	Control (root)	38.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.231
SRR9715740	Leaf	25.027
SRR9715741	Leaf	29.748
SRR9715739	Root	7.128
SRR9715742	Root	34.042
SRR9715743	Root	29.641

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.465
SRR8749028	MeJA induced 9h	93.824
SRR8749029	MeJA induced 9h	37.487
SRR8749030	Uninduced	15.369
SRR8749031	Uninduced	8.736
SRR8749032	Uninduced	13.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.730
SRR8400027	Control - Root	39.394