Gene detail

Gene detail information of Glyur000167s00012288

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49080.1	8.00E-96	Ribosomal protein S5 domain 2-like superfamily protein
NR	XP_004515926.1	0	PREDICTED: 37S ribosomal protein S9, mitochondrial-like [Cicer arietinum]
COG	YP_673724.1	8.00E-47	30S ribosomal protein S9 [Chelativorans sp. BNC1]
Swissprot	tr\|Q6B8X6\|RR9_GRATL	5.00E-27	30S ribosomal protein S9, chloroplastic
trEMBL	tr\|A0A072UZ40\|A0A072UZ40_MEDTR	0	30S ribosomal protein S9P {ECO:0000313\|EMBL:KEH35069.1}

Sequence

Transcript Sequence

>Glyur000167s00012288.1
ATGCTTTCTCGTCTAATCCCAAAACCCTCTCACTTCCGTCGTTTCTTCTCTCTTCCGTATAGACAACCCTATTTCCCAAACTCACCCATCAATCCCTATTTCACATTCGTTCCCAAACCCTATTCCTCAAGTAGCAGCAGCAGCAACAACAACAACAGTGGCAATGGTAAGGACCGGTTTACTCCGAATGTGTGGGGGAATTTCGGGGAGAATGAGGAGAAGTTCGANTCTTTCTTCGGTGAAGAAAGTGGGAGCCTNGCCGGAATGAACGACGGCGAAGGGGACAGAGCGGGGAAGGAGGTGAAGGAGGAGGAGGAAAAGTGGTGGTTGCAAGAGAAAGGTATTGATAATGAAGATGAGGATTCGATATTTAAAGGGATTGGGGAGAATGAAAGTGGAGAGAAGGGTGGTGGTGTTGGTGGTGACCATATTGGGTTGGGAGCAGAGAATCTGGAACAACCTTGGAGCTTGAGGGAGGAGGAAGANGAAGGTGGTGATGTGTTTGATTTCCAAGAGGAGGATGTGAGTCAAGTTGGGGNACTCAGTGGACTTGAGAGCCCACAACGTGCGTTTGGTGACTTGATTGCTGCTTCTGGAATCACGGACGAAATGCTTGACAGTTTGATTGCATTGAAAGATTTTGAAGGGGTTGATGGGTTGCCCCCTCTTAGTGAAATAGAAGATATGCGCTATGAGAGGAATACTAGAAAATCCACCAGAGCTGAAATGGAGCGTCTAAAGCAAGAGGAAGCGGCAAAGGCAAGGGTGAGACAAGTAGATGAAAAGGGACGTGCTTATGGAACAGGAAGAAGAAAGTGTAGTATAGCACGTGTCTGGGTTCAGCCTGGTAGTGGTAAATTTTTAGTTAATGATAAAGAATTTGACGTCTATTTCCCTATGCTCGATCATCGCGCTGCTCTCCTTCGACCTTTCTCTGAGACAAAGACATTGGGGCTATGGGATGTCAATTGTACTGTGAAAGGAGGTGGTGTTTCAGGGCAAGTTGGAGCTATACGATTGGGGATTAGCAAGGCTTTGCAAAGCTGGGAACCAGATTTGCGACCTCCTCTTAGAAGTGCTGGTTTCCTGACAAGGGATTCACGAGTTGTAGAAAGGAAAAAGCCAGGAAAGGCCAAAGCAAGAAAAAGTTTCCAATGGGTCAAGCGTTAATTGTAGGAGTATATCTTTCTCTGGATGGCGATTTTTATTGGCAATCCTCAATAACTTCTTGAGATTCGTTGATTCTGTACTACTTCACCTGTGATGTAATCAACATTTGAATTTCAATGACTATAGAGAATTTTGTTCACCCGGGATTTATGTTTTGAGTCATTCACTCTTTGGAGAGATACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	221094	224123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012288.1	PF00380.14	Ribosomal_S9	269	389	1.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.002
SRR1783600	control	17.836
SRR1783602	moderate drought stress	13.878
SRR1811619	moderate drought stress	12.459

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.770
DRR006520	Root Summer glycyrrhizin high producing strain	31.926
DRR006521	Root Winter glycyrrhizin high producing strain	19.718
DRR006522	Root Winter glycyrrhizin high producing strain	17.772
DRR006523	Root Summer glycyrrhizin low producing strain	24.960
DRR006524	Root Summer glycyrrhizin low producing strain	24.500
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.426

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.025
SRR2868004	Drought Stress (root)	33.781
SRR2967015	Control (root)	31.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.575
SRR9715740	Leaf	20.235
SRR9715741	Leaf	14.664
SRR9715739	Root	4.501
SRR9715742	Root	12.181
SRR9715743	Root	11.552

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.447
SRR8749028	MeJA induced 9h	55.030
SRR8749029	MeJA induced 9h	39.285
SRR8749030	Uninduced	16.993
SRR8749031	Uninduced	4.734
SRR8749032	Uninduced	5.846

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.928
SRR8400027	Control - Root	28.548