Gene detail

Gene detail information of Glyur000167s00012282.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08280.1	2.00E-156	hydroxymethylbilane synthase
NR	XP_004505653.1	0	PREDICTED: porphobilinogen deaminase, chloroplastic-like [Cicer arietinum]
COG	YP_423783.1	1.00E-107	porphobilinogen deaminase [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|Q43082\|HEM3_PEA	0	Porphobilinogen deaminase, chloroplastic (Precursor)
trEMBL	tr\|G7JQM6\|G7JQM6_MEDTR	0	Porphobilinogen deaminase {ECO:0000313\|EMBL:AES89528.1}

Sequence

Transcript Sequence

>Glyur000167s00012282.1
AGGGTAGGACCACATCGTTCTATCTTGTAGATCATATCATCATCACATTAACATCAATGGCAATTCACTTCGTGTCTCTCTACTCTGAACTGTGGGCACAGCGTTATTGCTGACCTGTGTTTGTGTGTGAAAATGGAGATGACCCTTTACTCCTCTGCGTTCACCACTCTTCCCTCTCCACCTTCCAATCCTTCCCTTTCCCTTCTCAGCTCCGCGCTTCCCTTCCCATCTTCCAAAACCTCACCTTTCTCCTCCAAATGTCGAACCAGGGCTTCTCTTGCCGTTGAGCAACAGACCCANCAGAACAAGGTTGCGCTTCTCAGAATTGGTACCCGAGGAAGTCCACTAGCTCTGGCTCAGGCATATGAGACCAGAGACAAACTCATGGCGTCGCATCTAGAGCTAGCCGAAGAAGGGGCCATTCAGATTGTAATAATAAAAACAACCGGTGACAAAATACTGTCGCAGCCGCTTGCAGACATAGGTGGGAAGGGCTTGTTCACCAAAGAAATAGATGAGGCACTCATAAACGGTGACATTGACATTGCTGTCCACTCGATGAAGGATGTTCCTACTTACTTACCTGATAGAACAGTTTTACCATGTAACCTTCCACGCGAGGATGTTAGAGATGCATTTATATCCTTGAGTGCAGCTTCGCTAGCTGATCTACCCCCTGGAAGTGTCGTTGGTACTGCTTCACTTAGACGGAAGTCACAGATACTCCACAGATATCCATCTCTAAATGTTCAGGAAAATTTTCGTGGCAATGTCCAAACAAGGCTGAGAAAACTCAGTGAGGGTGTTGTCCAAGCTACCCTATTGGCTTTAGCTGGACTCAAACGATTAAACATGACGGAAAATGTAACTTCAACTCTATCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGCATAGCTTGCAGAAGCAATGATGATAAAATGGCAGAATATATCGCTTCGCTGAATCACGAAGAAACGAGACTGGCAGTTACCTGTGAAAGAGCCTTCCTTTTGACTTTGGATGGGTCTTGCCGCACTCCTATCGCNGGGTACGCTTGCAGAGACAAGGATGGCAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCTGATGGAACCCGTGTGCTTGAAACTTCCAGAATTGGTCCTTATGCTGCTGAAGATATGATAAAGATGGGAAAGGATGCTGGGGAGGAGCTTCTTTCTCGAGCTGGACCTGGCTTTTTCGATAGTTAGCAACCTAGATTAGAAGTGCCAACAACACCCAATCGGTATGTAGGTATGGTAGGTTGCATGGTGAGCTTTTTAAAGTGGCTGAATCCCAAGTTTGTTTATTCTTTCACCCTGTGTTTAAGACTAAGATTTTCAAGTGAACCACACTCATCAGGGGTCAAATTGTGTTGTATCTTAAGGTGTGATTGGAAAGCCAAATTTTTGTAATGTGTATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	197553	201463	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01749	hemC, HMBS	EC:2.5.1.61	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0018160 peptidyl-pyrromethane cofactor linkage

GO:0033014 tetrapyrrole biosynthetic process

molecular_function
GO:0004418 hydroxymethylbilane synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012282.1	PF01379.15	Porphobil_deam	63	278	3.40E-82
Glyur000167s00012282.1	PF03900.10	Porphobil_deamC	288	360	1.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.853
SRR1783600	control	47.225
SRR1783602	moderate drought stress	34.953
SRR1811619	moderate drought stress	34.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.523
DRR006520	Root Summer glycyrrhizin high producing strain	31.256
DRR006521	Root Winter glycyrrhizin high producing strain	14.956
DRR006522	Root Winter glycyrrhizin high producing strain	14.796
DRR006523	Root Summer glycyrrhizin low producing strain	19.107
DRR006524	Root Summer glycyrrhizin low producing strain	18.695
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.321
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.841

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.385
SRR2868004	Drought Stress (root)	20.624
SRR2967015	Control (root)	22.201

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.970
SRR9715740	Leaf	77.951
SRR9715741	Leaf	79.499
SRR9715739	Root	25.488
SRR9715742	Root	28.404
SRR9715743	Root	29.404

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.699
SRR8749028	MeJA induced 9h	55.912
SRR8749029	MeJA induced 9h	27.707
SRR8749030	Uninduced	16.801
SRR8749031	Uninduced	6.261
SRR8749032	Uninduced	7.521

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.343
SRR8400027	Control - Root	50.968