Gene detail

Gene detail information of Glyur000167s00012277

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16260.1	1.00E-91	Glycosyl hydrolase superfamily protein
NR	BAE53384.1	0	beta-1,3-glucanase [Sesbania rostrata]
Swissprot	tr\|P52399\|E13L_TOBAC	6.00E-122	Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 (Precursor)
trEMBL	tr\|I7GK24\|I7GK24_SESRO	0	Beta-1,3-glucanase {ECO:0000313\|EMBL:BAE53384.1}

Sequence

Transcript Sequence

>Glyur000167s00012277.1
ACATCAGTCAGTGTGTAAAAGATTTCAGTTGAGTCAGTTTCATAATTTTCATTCAATCAATGAATTTTTTCTTCTCAAGAGGCAACACTGCCATGTCTTCCATATTGTTGCTCATTGGAATTCTATTATCTTCCACTGCAGTAGAATTTACAGGTGCACAATCCGTGGGTGTGTGTTACGGAGGAAACGGGAACAACCTCCCAACAAAGCAAGCAGTGGTGGATCTGTACAAATCAAACGGAATCGGCAAAATCCGTTTATACAACCCAGACGAAGGAGCACTCCAAGCCCTAAGAGGCTCAAACATAGAAGTAATCCTCGGTGTCCCAAACGACCAACTCCAATCCCTAACCAATTCCGGAGCCGCCACAAATTGGGTCAACAAGTACGTCAAACCCTATTCCCCAAACGTGAGAATCAAGTACATCGCCGTCGGGAACGAGGTTCACCCAGGTTCATCGGAATCCGGTTCAGTCCTCACCGCAATGCAGAACATTCAGAACGCAATTTCCTCATCCAATTTACAGAACCAAGTCAAGGTCTCCACCGCAATAGACACGACTCTGTTGGGTAATTCTTACCCACCAAACGACGGCGTTTTCAGCGACAGTGCGAGCCAATACATAAAGCCAATTGTTAGCTTTTTAGCAAAAAATGGGGCCCCACTTCTTGCAAACGTGTACCCTTATTTTGCTTATGTGAATAACCAACAAAGCATTGGTCTTGACTATGCTTTGTTCACTAGGCAAGGGAAAAACGAGGTTGGGTACCAGAACCTTTTTGATGCGTTGCTTGATTCACTCTATGCTGCGCTTGAGAAATCAGGGGGAAACAATGTTAAGGTTGTTGTGTCTGAGAGTGGTTGGCCTTCTGAAGGTGGAACTGGTGCTAGTGTTCAGAATGCTGGGACTTATTATAGGAATTTGATTAGGCATGCTAAGGGTGGGACACCTAAGAGGCCTAATGGACCCATTGAGACTTATCTTTTTGCTATGTTTGATGAGAACCAAAAGGGGGGTCCTGAAATTGAACGACACTTTGGTCTCTTTAGACCTGATAAATCGCCNAAGGTGGAGTATCAATTAAAGATATCAGAGTTGCTAGCTAGCAATATGTTCTTTACTGAAAGCAAAATGTCTGCCATCTTTCTGCTTGTTGGAATACTATCGCTCATTGGAGAACTAGAATTTACAGCTGCACAATCCNTAGGAGTTTGCTATGGAGTGAATGGCGATAATCTACCATCAAGGCAAGAAGTTGTAGACTTATACAAATCGAATGGCATTGGTAGAATGCGTATATACTACCCAGATGAAGAAGCCCTCCAAGCCCTTAAAGGTTCAAACATAGAGTTGATCCTTGACGTGGCCAAGGATTCCCTTGCTTCTCTCACAGATTCCAATACTGCCACAAATTGGGTTAACAAATATGTGACACCTTACGCACAAGATGTCAAATTCAAGTACATAGCTGTTGGGAATGAAATCAAGCCCAATGACAATGAAGCCCAATCCATTCTCCCAGCCATGAAAAACATTCAGAATGCAATTTCGTCAGCCAATTTACAAGGCCAAATCAAGGTCTCAACAGCTATAGACATGACTTTGATTACTAACTCNTATCCACCAAATGATGGTGTTTTCACTGACCAAGCAAACTCATATATAAAGCCCATAATTGACTTCTTAGTGAGCAATGGGGCACCACTTCTTGCAAATGTGTACCCTTACTTTGCTTATGCTGATCCTAACCAACAAGGCATTACTCTTGAATATGCTCTTTTTACTCAACAAGAGAACAATGATGCTGGGTACAAAAACCTCTTTGATGCCCATGGGAATGGGACTCCCAAAAGGCCTGGTGGCCCTATTGAGGTTTACTTGTTTGCCATGTTTGACGAAAACAAGAAGTCGGGTGCAGAAACTGAGAAACATTTTGGTGTCTTCAATCCTGACAAATCAGCTAAATATCAACTCACAGCACAATCAATAGGAGTCAGCTATGGGCGAGTAGCAAACAACTTGCCCCCAGCACAGGAAGTAATAGATCTCTACAAAGCAAATGGCATTGGAAGAATGAGAATATATGACCCTGACCCAGCAACCCTCCAGGCACTAAGAGGCTCCAACATAGAACTTAACATCTATGCTGCACTTGCACATGCCAACCTACAGAGTCAAATCAAGGTTTCAACNGCTATAAAGTTGTCATTGTTGGGAACTTCCTACCCCCCATCAAAAGGAGAATTCAGTCCTTCCTCAAGTTCTTACATAAATCCAATCATTAGATTCCTTGTGAAAAATAAGGCACCACTTCTTGCCAATTTGTACACTTACTTCAGCTACACAAGTGACACAAGTGACATAGACCTTTCCTATGCCTTATTCACCTCACCAAAAGTTCTTGTGAAGGATGGCAAATATGAGTACCAAAACCTCTTTGATGCATCATTGGGAGCACTTTATGCAGCTCTTGAGAAGGCTGGTGCACCTGATTTGGAAGTGGTGGTGTCAGAGAGTGGATGGCCATCTGAAGGGGGTGTTGCTGCAACAGTTGAGAATGCACAAGAATACTATGAGAATTTGATCAAGCATGTGCCTAGTGGAACACCAAATAGGCCTAACCAAGCCATAGAAACCTATTTGTTTGCCATGTTTGATGAAAACCAAAAAGAGGGTGCTGAGACACAACAACATTTTGGGTTGTTCACCTCAAAAAAAAAGACCAAGTATAGGTATAGACATGGGATTTGTCCACATGGGGCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	163924	177210	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012277.1	PF00332.13	Glyco_hydro_17	36	340	7.90E-126
Glyur000167s00012277.1	PF00332.13	Glyco_hydro_17	384	591	1.70E-72
Glyur000167s00012277.1	PF00332.13	Glyco_hydro_17	593	640	2.50E-18
Glyur000167s00012277.1	PF00332.13	Glyco_hydro_17	644	693	6.40E-15
Glyur000167s00012277.1	PF00332.13	Glyco_hydro_17	694	892	2.90E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.088
SRR1783600	control	5.012
SRR1783602	moderate drought stress	3.823
SRR1811619	moderate drought stress	3.764

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.857
DRR006520	Root Summer glycyrrhizin high producing strain	0.738
DRR006521	Root Winter glycyrrhizin high producing strain	0.675
DRR006522	Root Winter glycyrrhizin high producing strain	0.628
DRR006523	Root Summer glycyrrhizin low producing strain	0.818
DRR006524	Root Summer glycyrrhizin low producing strain	0.752
DRR006525	Leaf Summer glycyrrhizin high producing strain	133.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	132.971

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.677
SRR2868004	Drought Stress (root)	1.890
SRR2967015	Control (root)	1.299

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	94.615
SRR9715740	Leaf	49.152
SRR9715741	Leaf	111.435
SRR9715739	Root	1.273
SRR9715742	Root	3.886
SRR9715743	Root	3.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.604
SRR8749028	MeJA induced 9h	34.332
SRR8749029	MeJA induced 9h	6.113
SRR8749030	Uninduced	8.590
SRR8749031	Uninduced	5.580
SRR8749032	Uninduced	3.510

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.132
SRR8400027	Control - Root	4.676