Gene detail information of Glyur000167s00012273 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12430.1 | 1.00E-174 | Heat shock protein DnaJ with tetratricopeptide repeat |
| NR | XP_004505657.1 | 0 | PREDICTED: platelet binding protein GspB-like [Cicer arietinum] |
| Swissprot | tr|Q84JR9|TTL4_ARATH | 1.00E-17 | TPR repeat-containing thioredoxin TTL4 |
| trEMBL | tr|I1LIL7|I1LIL7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G10100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 148769 | 157956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000167s00012273.1 | PF13414.1 | TPR_11 | 586 | 659 | 5.80E-13 |
| Glyur000167s00012273.1 | PF13414.1 | TPR_11 | 844 | 911 | 8.30E-15 |
| Glyur000167s00012273.1 | PF00226.26 | DnaJ | 987 | 1052 | 2.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.894 |
| SRR1783600 | control | 4.001 |
| SRR1783602 | moderate drought stress | 5.074 |
| SRR1811619 | moderate drought stress | 5.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.296 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.486 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.736 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.376 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.136 |
| SRR2868004 | Drought Stress (root) | 9.175 |
| SRR2967015 | Control (root) | 8.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.654 |
| SRR9715740 | Leaf | 1.965 |
| SRR9715741 | Leaf | 3.130 |
| SRR9715739 | Root | 0.658 |
| SRR9715742 | Root | 6.591 |
| SRR9715743 | Root | 6.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.566 |
| SRR8749028 | MeJA induced 9h | 5.837 |
| SRR8749029 | MeJA induced 9h | 1.185 |
| SRR8749030 | Uninduced | 5.029 |
| SRR8749031 | Uninduced | 2.577 |
| SRR8749032 | Uninduced | 1.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.985 |
| SRR8400027 | Control - Root | 10.099 |