Gene detail

Gene detail information of Glyur000167s00012272

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50450.1	6.00E-166	Saccharopine dehydrogenase
NR	XP_004505659.1	0	PREDICTED: uncharacterized protein LOC101510175 isoform X2 [Cicer arietinum]
COG	YP_007144714.1	9.00E-55	saccharopine dehydrogenase [Crinalium epipsammum PCC 9333]
trEMBL	tr\|G7JQK5\|G7JQK5_MEDTR	0	Saccharopine dehydrogenase {ECO:0000313\|EMBL:AES89507.2}

Sequence

Transcript Sequence

>Glyur000167s00012272.1
GCAGTAGCAAAACAAAACAGCGAGTGCAAGGATAACGTGATAACTGATAAGACGAAGTGCGACCCTGGCGCTGCCGCGGAATTCAATGGCGCCAACTTCATCATTGCCTCTGAATTTGAATTTAAAGCTCACCGCCTCCGCCGCCGCCACGGCCACCAAGCTCCCGGAGTTGCCGGAGAAGATCCGCAACTCAAGAGTGTTAGTCCTCGGCGGAACTGGTCGGGTCGGAGGATCCACCGCCACCGCACTCTCCAACCTCTGCCCTGACCTTCGGATCCTCGTCGCCGGTCGAAACAGAGAGAAAGGTGAAGCTCTCGTTGCGAAACTCGGCGCCAATTCAGGTTTCGCTCGTGTCGACATCGACGACGTCAATTCACTGGAAACTGCGCTGAAAGGTGTGGATCTTGTAGTTCATGCCGCTGGTCCTTTCCAACAGGCAGAAAGATGTAGCGTGCTTGAAGCTGCTATAAATACCAAGACTGCATATATTGATGTTTGTGATGACACAACCTATTCAATGCGTGCAAAATCCTTTATGAGTAGGGCGTTGGCTGCAAATGTTCCGGCTATAACAACCGTGGGAATATACCCCGGAGTGAGCAATGTCATGGCGGCAGAGTTAGTCCGTGCTGCAGAAAGTGAAAGTAAAGATAAGCCAGAGAGGCTAAGGTTCTACTACTACACAGCTGGAACTGGTGGGGCTGGTCCAACCATATTAGCAACAAGCTTCTTGCTGTTGGGAGAGGAAGTAGTTGCATATAACAAAGGAGAAAAGATCAAACTGAAGCCATATAGTGGAATGCTCAATGTTGACTTCGGAAAAGGGATTGGCAAAAGAGATGTTTATCTATTGAATTTACCAGAGGTTAGAAGTGCTCATGAGATTCTAGGAGTGCCAACTGTAAGTGCTAGATTTGGAACATCACCATTTTTCTGGAATTGGGGAATGGAAGCTATGACAAAACTTCTTCCATCGGAATATCTGAGAGACAGAAGTAGAGTCGGAAGGTTGGTTGAGTTGTTTGATCCTGTTGTTCGAGCAATTGATGGGATTTCTGGAGAACGTGTATCAATGAGGGTTGATTTGGAATGTTCAAGCGGACGAAATACAGTTGGCATTTTCAGCCATAGGAGACTTTCGGTATCTGTAGGAATTGCGACAGCTGCATTTGCACTTGCAGTTCTTGAAGGAAACACGCAGCCTGGGGTTTGGTTTCCCGAAGAGCCCCAAGGACTTCCAATTGAAGCAAGAGAAGTTCTTCTCAAGCGTGCTAGCCAGGGAACGATTAACTTTGTAATGAACAGGCCACCGTGGATGATTGAAACAAATCCAAAGGAGCTTGGATTAGGAATATATGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	143300	148004	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012272.1	PF03435.13	Saccharop_dh	38	381	1.00E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.665
SRR1783600	control	0.690
SRR1783602	moderate drought stress	0.649
SRR1811619	moderate drought stress	0.657

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.816
DRR006520	Root Summer glycyrrhizin high producing strain	0.900
DRR006521	Root Winter glycyrrhizin high producing strain	1.495
DRR006522	Root Winter glycyrrhizin high producing strain	1.477
DRR006523	Root Summer glycyrrhizin low producing strain	0.867
DRR006524	Root Summer glycyrrhizin low producing strain	0.958
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.475
SRR2868004	Drought Stress (root)	4.396
SRR2967015	Control (root)	3.987

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.649
SRR9715740	Leaf	34.508
SRR9715741	Leaf	16.917
SRR9715739	Root	0.690
SRR9715742	Root	0.091
SRR9715743	Root	0.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.444
SRR8749028	MeJA induced 9h	0.529
SRR8749029	MeJA induced 9h	1.061
SRR8749030	Uninduced	0.581
SRR8749031	Uninduced	0.363
SRR8749032	Uninduced	0.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.267
SRR8400027	Control - Root	3.840