Gene detail

Gene detail information of Glyur000167s00012267

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12400.1	0	DNA binding;zinc ion binding;DNA binding
NR	XP_003538947.1	0	PREDICTED: uncharacterized protein LOC100800973 isoform X1 [Glycine max]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	4.00E-09	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|K7LNU7\|K7LNU7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G10150.6}

Sequence

Transcript Sequence

>Glyur000167s00012267.1
GGGAGAGAAAACATCGTTTGGATTTCGTTCCCAACTTCCGCACCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTATATTTCCTTGCGTGTGCCCCGCCCCTTTTCATTTCCAATTTCCAAACACTCCCAAAAATTTCTCTCTTCTTCCTCTGCTGCTCCCAGCCAGGGTTTTTCTCTTCTTCTCTGTTCCCACCGATTCCTCTCCTTTATTTTCCAACCCTTAATTACATTCCACCTCATAGGGATCACAATCACAATCACAATCGTGTGTTAGGACTAACTACTACAGTGATGGAGTTCGTGGGGAAAACCGTTAAGAAGGAGGTGAAAGGTGTTGGCACTGTCTCGGGAACTGTGAAATCCTACGACCCTACCTCTGGCTTCGTGGAGATCCTCTACGAAGATGGTCATTCCGAGGAGTTGGANTCCTCTGACGTGGCTTCCCTCCTCGAATCTCCATCACCGGAGCTCGCCACCGCCAGGCCTCGGGTCGGTCGGAAACCCAAAAAGCGCCGTCGCGTAGAGCGGAAGCATGAAACGACGACGTCTTCAGGTAATGTTGTTAGTGACAACAACAATTTGGTGGCAGAGGGTAGTGAGCTTAGGGGTACTAATAATAATGATAATGATGATGATAATAATAATGGTTCTATTGGCGGGAACTTGGATGTGGGAAATGGGGAGAATGGAGGGAATCTTAATGTGAATGTGAATGGAAGTGTGAACGGAAACGGGAGTGTGGGAACNGTAGGAAAGGGAATTGAGGTTGAAGAGGGTGATTTGAATGAGGGTGTATCTGCTAATGGGAATTGTGTNAAAGATGGACTTGATTTGAATGCTAGGGTTAACCTGAATGAGGATACGGATATGGATATGGATATCAATTTGAATAATGATGCGTGTGGTTCGCCTTTTGATGCTGAGGGTGGTGGTTTGNAGAGACGGGATTGCATTGACTTGAATTTGGATGTGAATAACGAGGAGGATGTGAACCCGAGTGCTGGTGGTTGTTCGGGAGGGGAAACGTTGCGGCGGGAATGTAAATTTGATTTGAATGTGGAGGTGTGTGAGGAAGTTAGGGATGCTCATGNAGACGGACATGCTGAGGTAGATGCTTTGGTTGGTAAGATGGGGGAGCTCCAAGAGGAAGAGACAAATGTTAATCATAGATCCATGGAAGATGGTGGTGTTCTTGGTAATTTGAATCATGTTTCTGATGCTGTCAAATTGGAGGAAATTTCTGCCCAGCATAAAATGGAAGGTGATGATGGTAAAGAAGGTGCAGCAATGGATTGTCCCTCCGAAGCTGGTTTTGCCATAGTTCATGAATGCCAAGATGATCCGGGAAGTCCGTGCAACCAAGGAAGTAGTCGGAGGAAGAGAAGAAAAGTATCAGATAATCTAGAAACCACCATGGACACAGTTTTAAGGAGGAGTTCTCGCCGGGCATCGGCTAGAAAGAAGAATTCAAGCGCNGTATCTGTGCAGGTGACTGATGGTCCTTTGCCATCCTTGGGAACCAGTGTAACAGAAGAAAAACCTTTAATGCCTGATACTGAGAAATATGAACAATGCAATGTTCCTCTTCCGAAGCTGCAATTACCCCCTTCTTCTCAAAAATTGAAATTAGATGATGTTCCTGTTCTTGAACTTTTTTCCGTTTATGCTTGTTTAAGATCNTTCAGTACTTTGTTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTGGCCGCATTAAAGTCTGAAGTCCCAAGTATATTATTTGACAGCATTCATGTTTCTATGTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATAATGAGGGTTCNCAATCTGCATCCATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATGTTCTTGGCCGAGTACCTTCGGATTCATAGTTCGGGACTTAAAACTGGTTTTGATCTTAACCATTCAATGTTCAGAACTGACTACTACAAACATCCTATAACTTTGAAGCTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGGCTGGTATGGGTTTTGATCAGAATACTTATTTTGACATATGCAAGAAAAAAAGAGCTGNAATGGATGTTTCTGGTGGCTCTTGCTTGACTGACGAGATCGTGGATGACACAACTGACTGGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGCAATTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGAATTGCATGTGACAGTCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCTATTGGCACACACGGGGCTTGGATGAAATCACGAAGGTCACTCCGAGGAGCAGACTTGTTAGGGATTGATCTTCATGGCCGTCTTTATTTTGACAGCTGTGGGTACCTGTTAGTGTCAAACTCACCAGATGCAGTATCCTTGTTCAATTACTACCACAGAAATGACCTCCATGTTGTAATTGATGTTCTAAAGTCTATGGATACTTTATATGGAGACATATTAATGGCTATCTNCAAGCATTGGGATGTACCTGTTGAATCAAAGTTGACGGGTGAATATTCTGCTATGCATACATCTNTAGCACCTTTTACTTCTTCAGAGACATGTATGGACAAGAATCAGGCTGATGATCAAAGAAAGTTGGANGAAAGTTCAACTATTGACTGTTGTACTCTTCATGGCCAAGAGTTTCCAAAAGCTGGGAACCGCCTAGACTCGATGACAACTATAGAAAGTCCTTGTATAGCTTCAGAAGGATCAGCTAATACTGCACAAATGAGATCAGGCATTGAGAATGTTCAGATGCACAGGCTATATGATTCCAATAGATCTGATGAATCCTTGAATCAGTCAGGAATACCAGAAAAACACCTTCCCATTGGTGACTGTTCTTTGACATCTTCAAGTTTAGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGCAATACCCCTCACATGGGCAATAAGGATATGTCACAAGAACCTTCTGGGATTGACTATATAAACTATTACAGCTTTGCCCGGGTAGCCTCATTAATTGCACAGGAGTTGATGTGTAAGTCACCTGAAAAGATCAATAAGAATATTGCAATGTCTGAAGAAGAAATAATTTCAGAGCAATCAAAGGCCATCATGAAGAAATCTACCAACTTTTGTTGGCCAAGTATTCAAAACCTGAATGCAGCTGCCCAGAAGGAAAAATGTGGGTGGTGCTTTTCATGCAAAGTTGCAAATGATGACAGAGATTGCTTGTTCAATTCTGTGGTGAAGCCTGCTTATGAAGTGTCTAAAAGTACTTCAGCTGGGCTACAATCCAGGAAGATCCAGCATGGACATCTTAGAGAGATCATATGTCATATTTTCTCTCTTGAGGTTCGATTACGGGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTCTTTCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGGCATCTTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGTTACTATGGGATCAGCTACTCATATTGTGGTCAGTTCATCGCGGACATCCTCAAGGCATGGTACTGGAAGGAAAAGGGCTAGGTATTCAGATATTGAATCCAGTTCATCTTCAAACACTACTAGTGGTTTGGGAATGTATTGGTGNAGAGGTGGTAGGCTTTCCCGAAAATTGTTCAATTGGAAGGTTTTGCCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCCGGGCGTACAAAGATACCAGGCATTTTGTATCCTGAGAATTCAGATTTTGCAAAGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATATGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTATTCAAAAAAGCAATTGTACGCAGGAAATGCACTGATGGACAATCNGTGAAATACCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAGGCATGGTTCTTTGTTGGAAGAATCCTCAAGTGAGAGGAAAAAATATTGGCTGGATGAGTCTTATGTTCCCTTGCATCTTTTGAAGAATTTTGAGGAAAAAAGAATTGTCCGGAAGTCCAATGATAATAAACTTGGAAAAATTCTTGAGATTGGTAGAGTAAAAAGGGTCCCTCAACAACGGGGTTTTTCATATTTGTTTTCCAGAATGGAAAGATCTGATTGCCATCAGTGTGGGCATTGCAAAAAAGATGTTCCAATCAGGGAAGCTGTGAGTTGCCTTTATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGAACTACTGAAGGCACATATTCATGTCATAGATGCCAGGATGGGTTAAATGTAAAGACTAATACTAACAGAAGGAAAATTGGCTCAAAACTGCAGACGATTCAATCACAGAAATGTAAAAATGTCCCGTTAGTTTGTAAATCAGTGAACCTTAAAGGTAATAAAAAAGCATCAAGTAAGGCGCGGCAGTTGAGATCTCAAACCAATAAGAAGGTNCCATCAAGTGTACCTCTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTATTTGCAGAGTCAATTGATTGGAGGACGTAAAAAAGGAATGCAAAGTAAAAAGAATGTCGGGCGTAAAAAAGGAAAGAAGAGTAAATCCAAGAAGGTGACCTCTCGAAAGCCCAAGGAAACTACTGCTCAACATAGGAAGTTGGCTTTAACTACTGCATGTAAAAAAAGAACAAAAAATTGTAACAGTTACTGGCTTAATGGTCTTTGGCTGTCTAGAAAGCCAAATGATGAACGAGTAATGCTTTTTAAAGAGAAAAAGCATATTGTCTTCCCCAGAGATTTGTCTGGTTCCCTAGATTGTCCTAAGTGCTGCCTTTGTTGTGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATCTGTGGAGAATGGTTTCATGGGGATGCTTTTGGGCTCACTGTAGAGAATGCCAGACAACTTATTGGATTTAGGTGCCATGTTTGTCGTGATAGGGCTGCTCCGATCTGCCCCCATATGAAGAGTAATGCATCGTCTCGCACTGAAAGCAATGCAGCTATTGAGTGTGCAGAGGAATTATCTAATCCTGTCTCTCTCCCACATTTGAGTGAGGTGTGTTTGCNTCTTCTAAACCTGAATTGT

Protein Sequence

>Glyur000167s00012267.1
GRENIVWISFPTSAPFSLSLSLSLSLYFLACAPPLFISNFQTLPKISLFFLCCSQPGFFSSSLFPPIPLLYFPTLNYIPPHRDHNHNHNRVLGLTTTVMEFVGKTVKKEVKGVGTVSGTVKSYDPTSGFVEILYEDGHSEELXSSDVASLLESPSPELATARPRVGRKPKKRRRVERKHETTTSSGNVVSDNNNLVAEGSELRGTNNNDNDDDNNNGSIGGNLDVGNGENGGNLNVNVNGSVNGNGSVGTVGKGIEVEEGDLNEGVSANGNCVKDGLDLNARVNLNEDTDMDMDINLNNDACGSPFDAEGGGLXRRDCIDLNLDVNNEEDVNPSAGGCSGGETLRRECKFDLNVEVCEEVRDAHXDGHAEVDALVGKMGELQEEETNVNHRSMEDGGVLGNLNHVSDAVKLEEISAQHKMEGDDGKEGAAMDCPSEAGFAIVHECQDDPGSPCNQGSSRRKRRKVSDNLETTMDTVLRRSSRRASARKKNSSAVSVQVTDGPLPSLGTSVTEEKPLMPDTEKYEQCNVPLPKLQLPPSSQKLKLDDVPVLELFSVYACLRSFSTLLFLSPFELEDLVAALKSEVPSILFDSIHVSMLQTLRKHLEYLSNNEGSQSASICLRNLNWDFLDLVTWPMFLAEYLRIHSSGLKTGFDLNHSMFRTDYYKHPITLKLEILQYLCDDMIEAEAIRSELNRRSLVTEAGMGFDQNTYFDICKKKRAXMDVSGGSCLTDEIVDDTTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIACDSLPEGDWYCPECAIGTHGAWMKSRRSLRGADLLGIDLHGRLYFDSCGYLLVSNSPDAVSLFNYYHRNDLHVVIDVLKSMDTLYGDILMAIXKHWDVPVESKLTGEYSAMHTSXAPFTSSETCMDKNQADDQRKLXESSTIDCCTLHGQEFPKAGNRLDSMTTIESPCIASEGSANTAQMRSGIENVQMHRLYDSNRSDESLNQSGIPEKHLPIGDCSLTSSSLDVGRKINLRSVGASNTPHMGNKDMSQEPSGIDYINYYSFARVASLIAQELMCKSPEKINKNIAMSEEEIISEQSKAIMKKSTNFCWPSIQNLNAAAQKEKCGWCFSCKVANDDRDCLFNSVVKPAYEVSKSTSAGLQSRKIQHGHLREIICHIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLSVKRLLLLLESNLRHLALSADWLKHVDSVVTMGSATHIVVSSSRTSSRHGTGRKRARYSDIESSSSSNTTSGLGMYWXRGGRLSRKLFNWKVLPRSLVTKAARQAGRTKIPGILYPENSDFAKRSRYVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESRKSVRLFKKAIVRRKCTDGQSVKYLLDFGKRRAIPDVVIRHGSLLEESSSERKKYWLDESYVPLHLLKNFEEKRIVRKSNDNKLGKILEIGRVKRVPQQRGFSYLFSRMERSDCHQCGHCKKDVPIREAVSCLYCKGYFHKRHVRKSGGTRTTEGTYSCHRCQDGLNVKTNTNRRKIGSKLQTIQSQKCKNVPLVCKSVNLKGNKKASSKARQLRSQTNKKVPSSVPLRRSTRKAKSLYLQSQLIGGRKKGMQSKKNVGRKKGKKSKSKKVTSRKPKETTAQHRKLALTTACKKRTKNCNSYWLNGLWLSRKPNDERVMLFKEKKHIVFPRDLSGSLDCPKCCLCCGDGCTLNYIACEICGEWFHGDAFGLTVENARQLIGFRCHVCRDRAAPICPHMKSNASSRTESNAAIECAEELSNPVSLPHLSEVCLXLLNLNC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	98875	113773	+

Gene family

Gene family	subfamily
Transcription Factors Family	DDT
EAR motif-containing Proteins	DDT

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012267.1	PF02791.12	DDT	549	605	1.20E-10
Glyur000167s00012267.1	PF00628.24	PHD	745	787	9.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.315
SRR1783600	control	5.283
SRR1783602	moderate drought stress	9.656
SRR1811619	moderate drought stress	9.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.274
DRR006520	Root Summer glycyrrhizin high producing strain	4.172
DRR006521	Root Winter glycyrrhizin high producing strain	4.177
DRR006522	Root Winter glycyrrhizin high producing strain	4.056
DRR006523	Root Summer glycyrrhizin low producing strain	7.123
DRR006524	Root Summer glycyrrhizin low producing strain	7.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.102
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.447
SRR2868004	Drought Stress (root)	14.004
SRR2967015	Control (root)	14.320

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.681
SRR9715740	Leaf	6.399
SRR9715741	Leaf	6.023
SRR9715739	Root	1.016
SRR9715742	Root	9.327
SRR9715743	Root	7.782

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.203
SRR8749028	MeJA induced 9h	20.647
SRR8749029	MeJA induced 9h	5.897
SRR8749030	Uninduced	16.797
SRR8749031	Uninduced	16.395
SRR8749032	Uninduced	8.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.272
SRR8400027	Control - Root	11.959