Gene detail

Gene detail information of Glyur000167s00012265

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50420.1	4.00E-179	scarecrow-like 3
NR	XP_003537745.1	0	PREDICTED: scarecrow-like protein 3-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LPR8\|SCL3_ARATH	0	Scarecrow-like protein 3
trEMBL	tr\|I1LIM7\|I1LIM7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G10170.4}

Sequence

Transcript Sequence

>Glyur000167s00012265.1
ATGTTGAAAGAAGGGTCGTTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGATCTCCTCACCCTTGGCTTAGAGAACTGAAATCCGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTGGCTTGTGCAAATCATGTAGCTGCTGGTAGTCTTGAAAATGCAAACACNACACTTGAGCAAATTTCCCTCCTTGCTTCCCCGGATGGGGATACCATGCAGCGAATCGCNGCGTATTTCACCGAAGCGCTTGCCGATCGGATACTTAAGACATGGCCTGGGCTCCACAGAGCCCTGAACTCGACTAAAATGGTTATGGTTTCCGAAGAAATCCANGTGCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTAGCATTTGTCCTGACGAATCAGGCTATCGTTGAGGCAATGGAAGGGGAGAAAATGATTCACATAATTGATCTCAATGCCGCTGAACCTGCCCAGTGGATCGCGCTCCTCCAAGTCTTGAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATCACCGGGGTTCATCAGAAGAAAGAGGTTATGGACCAGATAGTTCATAGGCTGACTGAAGAAGCTGAGAAGTTGGATATACCATTCCAGTTCAATCCTGTAGTCAGCAAATTAGAGAACCTTGATTTCGACAAACTTCGCGTGAAAACCGGGGAGGCACTGGCAATAAGTTCCATTCTCCAATTGCATACCCTTTTAGCCTGTGATGATGAAGCCATGCAGAGAAAATCTCCTCTTCTGTCGAAAAACTCAAACGGAATTCACTTGCAAAGAGTCCTGCCAATGAGCCAAAGCACATTAGGTGATTTGCTTGAGAAAGATATGGTTAATGGTTACACCCCAAGTCCTGACTCAACCTCGTCGTCACCGGCATCTTTGTCCACATCAAATTCAATGAANATGGAGAGCTTTCTCAATGCCTTATGGGGATTGTCACCAAAGGTCATGGTTGTAACAGAACAAGACTCTAATCATAACGGTTCNACTCTGATGGACAGGCTACTAGAAGCTCTATATTCTTATGCAGCACTATTTGATTGCTTGGAATCCACTGTCTCAAGAGCCTCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTNGGTGAGGAAATCAAGAACATTATCGCGTGCGAGGGATCTGAACGAAAGGAAAGGCATGAAAAGCTGGATAAGTGGTTCCAGAGATTTGATCTAGCTGGGTTTGGTAATGTGCCTTTGAGCTATTTTGGTATGTTGCAAGCAAGGAGGTTCCTGCAGAGCTATGGTTGTGAGGGATATAGAATGAGGGAGGAAAATGGTTGTGTAGTAATTTGCTGGCAGGATAGGTCCTTGTTTTCAATATCAGCTTGGAGATCTAGGAATCATGACTATTCATCAATGCCTGGTAAACCCCATCAGGAAAGAAAAATTGGGAAGCCAAAGAAAGCATCTCAACATGGCAAAAGCAAATCATCGTTTTCTTTCTCCCCAAGGCCATCTTGTCTTGTGTTTTTGCTGCTTTTTTTGGTTGGTATTGTGGCTGTTGGAAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	76763	79068	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0000989 transcription factor activity, transcription factor binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012265.1	PF03514.9	GRAS	36	460	2.80E-138

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.409
SRR1783600	control	18.345
SRR1783602	moderate drought stress	18.426
SRR1811619	moderate drought stress	18.178

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.466
DRR006520	Root Summer glycyrrhizin high producing strain	23.107
DRR006521	Root Winter glycyrrhizin high producing strain	28.933
DRR006522	Root Winter glycyrrhizin high producing strain	28.293
DRR006523	Root Summer glycyrrhizin low producing strain	29.509
DRR006524	Root Summer glycyrrhizin low producing strain	29.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.938

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.224
SRR2868004	Drought Stress (root)	25.788
SRR2967015	Control (root)	25.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.018
SRR9715740	Leaf	24.372
SRR9715741	Leaf	23.855
SRR9715739	Root	9.103
SRR9715742	Root	40.471
SRR9715743	Root	32.989

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.132
SRR8749028	MeJA induced 9h	11.136
SRR8749029	MeJA induced 9h	6.134
SRR8749030	Uninduced	11.188
SRR8749031	Uninduced	5.423
SRR8749032	Uninduced	5.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.270
SRR8400027	Control - Root	19.074