Gene detail

Gene detail information of Glyur000167s00012262

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22200.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	KHN09253.1	0	Putative aminotransferase y4uB [Glycine soja]
COG	YP_002297234.1	5.00E-171	class III aminotransferase [Rhodospirillum centenum SW]
Swissprot	tr\|Q84P52\|GATP3_SOLLC	0	Gamma aminobutyrate transaminase 3, chloroplastic (Precursor)
trEMBL	tr\|I1LIN0\|I1LIN0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G10190.1}

Sequence

Transcript Sequence

>Glyur000167s00012262.1
ATGACTACCGCTTCAGCTTTAGCATGTGCTGCAGCTCCCAGAAGTTTTCAGGAAAATCTCCTTCAGGTTCCCTTATGGTCTAGGTCAAATAGTACAGAATCTTCCTTGGCAAAGGATAATTCAACAAATGATGCGAAAACTGGTCAAGGGTTCAAGGGCCATGATATGCTTGCCCCTTTCACAGCTGGGTGGCAGAGTACTGATGTAAATCCTTTGATTATAGAAAAGTCAGAGGGAAGCTATGTATATGACATTAATGGGAAGAAATATCTTGACGCACTTGCTGGTCTATGGTCCACTGCTTTAGATTGTGGTCATTGCAATCTTAGTTTCCCTGCTACCTATTGCTGCCATGCAGGGGGAAATGAGCCACGCCTTGTTGATGCTGCCATGGGACAATTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGGACCACAAGACCTTCTCTGGATCTAGCCAAGGAGCTCCTAGAAATGTTTACAGCCAGAAAAATGGCTAAAGCCTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCACTTGGAAGACCAAATAAGAAGAAATTCATAGCTCGTGTTAAATCGTATCATGGTTCAACATTGATATCAGCCAGTCTTTCTGGCCTTCCGGCTTTGCATCAAAAATTTGATCTGCCAGCTCCTTTTGTCTTGCATACTGACTGTCCACATTACTGGCGATATCATCTTCCAGGTGAGACAGAGGAAGAGTTTTCAACCAGATTGGCCAACAATTTGGAGGAGCTAATTCTGAAAGAGGGACCAGAGACAATTGCCGCATTTATTGCGGAACCAGTGATGGGGGCTGGAGGTGTAATACCTCCACCATCAACTTATTTTGAAAAGATCCAAGCGGTTGTCAAGAAGTATGACATTCTTTTTATTGCGGATGAGGTGATATGTGCCTTTGGCAGGGTTGGGGCAATGTTTGGATGTGACAAGTATAATATTAAGCCAGACCTTGTTTCCTTGGCAAAGGCGCTTTCTTCTGCATATTTGCCAATTGGAGCTGTCCTTGTGAGCTCAGAAGTTGCTGAAGTTATAAGCTCGCAAAGCAACAAACTTGGTACATTTTCTCATGGGTTTACTTATTCTGGACATCCTGTAGCATGTGCCGTTGCACTTGAAGCACTCAAGATCTACAAGGAAAGAAATATTGTTGACGTAGTGAACAAGATCTCCCCAAGGTTCCAAGAGGGCATAAAAGCCTTTTCTGACAGTCCCATCATTGGAGAGATTCGGGGAACTGGCTTGATTATGGGAACTGAGTTCACAGACAACAAATCACCAAATGATCCATTTCCTCCTGAATGGGGCAAGATGTACATTACAGGAGTTGGTGCCTATTTTGGAGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTAGCTGGAGATAATATCATGATGTCTCCACCATTTATTATGTCCCATGAACAAGTTGAAGAGTTAATCAGCAAATATGGGAAAGCTTTGAAAGACACGGAAAAGAAAGTACAGGAGCTCAAGTCTCAGCGCAAGTAGCTTAAGACCGATGATGGCATGATAAATTATGCTGCCTTAGGAATTATTTATTGTAATAACCTGCCAGACAAATTACTCTTAATAGAACTTATATGTCAACCTTTTCGTTGTTGTATATGTTGGCGTGTGTGTGTAATTTGGATCCCTGTTAAAATAAAGTGCAGGGAGTGCAGTTCCAAATTTAAGCATTAAAATCTAATAAGTTTAATTTCAAAATATAATGTCTTTTAATAAAATAAATCAAGGGATGAGATTGATGCTCGCAATCCATTACGGTGATGTAGACAACTGTATGCAATCGCAATCCAATAATGCTCGTTACACATCTGAGTGAAGGTGTGCAGAAATTTTAATAGGCCAAACTGTACTGAGGTGATGAAAATTGTGCAAATGTGAGGTTATGCGTGTTCTTAGCATTATTTATATGTTTATGCATTTATGGAAAATAATAGCAGCAACTGTCTATATGAAGTATGTGTTGTGCATCTGAACCATTAAAATTAAGCTATATTGATCTGGTGAAATCAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00167	47657	56343	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16871	POP2	EC:2.6.1.96	Butanoate metabolism	map00650
			Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000167s00012262.1	PF00202.16	Aminotran_3	74	444	2.40E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.017
SRR1783600	control	25.088
SRR1783602	moderate drought stress	21.081
SRR1811619	moderate drought stress	20.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.183
DRR006520	Root Summer glycyrrhizin high producing strain	44.462
DRR006521	Root Winter glycyrrhizin high producing strain	18.937
DRR006522	Root Winter glycyrrhizin high producing strain	18.407
DRR006523	Root Summer glycyrrhizin low producing strain	48.420
DRR006524	Root Summer glycyrrhizin low producing strain	47.710
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.954

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	116.376
SRR2868004	Drought Stress (root)	172.053
SRR2967015	Control (root)	147.299

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.217
SRR9715740	Leaf	54.079
SRR9715741	Leaf	71.319
SRR9715739	Root	32.586
SRR9715742	Root	51.690
SRR9715743	Root	42.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.068
SRR8749028	MeJA induced 9h	138.787
SRR8749029	MeJA induced 9h	72.672
SRR8749030	Uninduced	79.169
SRR8749031	Uninduced	30.713
SRR8749032	Uninduced	21.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.342
SRR8400027	Control - Root	87.626