Gene detail information of Glyur000167s00012261 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATMG00860.1 | 2.00E-16 | DNA/RNA polymerases superfamily protein |
| NR | XP_010655166.1 | 1.06E-118 | PREDICTED: uncharacterized protein LOC104880390 [Vitis vinifera] |
| Swissprot | tr|P92523|M860_ARATH | 3.00E-18 | Uncharacterized mitochondrial protein AtMg00860 |
| trEMBL | tr|Q84ZV5|Q84ZV5_SOYBN | 5.00E-113 | Polyprotein {ECO:0000313|EMBL:AAO23078.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 27894 | 37278 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000167s00012261.1 | PF00665.21 | rve | 628 | 714 | 1.40E-08 |
| Glyur000167s00012261.1 | PF00385.19 | Chromo | 1107 | 1153 | 5.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.747 |
| SRR1783600 | control | 5.695 |
| SRR1783602 | moderate drought stress | 4.364 |
| SRR1811619 | moderate drought stress | 4.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.865 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.066 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.591 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.717 |
| SRR2868004 | Drought Stress (root) | 5.009 |
| SRR2967015 | Control (root) | 5.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.660 |
| SRR9715740 | Leaf | 1.394 |
| SRR9715741 | Leaf | 1.313 |
| SRR9715739 | Root | 0.551 |
| SRR9715742 | Root | 0.646 |
| SRR9715743 | Root | 0.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.047 |
| SRR8749028 | MeJA induced 9h | 3.122 |
| SRR8749029 | MeJA induced 9h | 1.180 |
| SRR8749030 | Uninduced | 3.313 |
| SRR8749031 | Uninduced | 0.838 |
| SRR8749032 | Uninduced | 1.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.042 |
| SRR8400027 | Control - Root | 10.271 |