Gene detail

Gene detail information of Glyur000166s00010606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09760.1	4.00E-94	U2 small nuclear ribonucleoprotein A
NR	KHN34237.1	4.12E-171	U2 small nuclear ribonucleoprotein A' [Glycine soja]
Swissprot	tr\|P43333\|RU2A_ARATH	7.00E-131	U2 small nuclear ribonucleoprotein A'
trEMBL	tr\|C6T8S2\|C6T8S2_SOYBN	1.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G18440.3}

Sequence

Transcript Sequence

>Glyur000166s00010606.1
AAAGCACTTATAAGCAGCGACCCGAGTCGAGTCCAGCCCAGTTGCCCTTGGACTCGTTGGTATCGTGTTCCATACCCTAACAACGGATTCAGTTTGTTTGAGTTCCGAGGCACCATCTCTCACACTTCCTTGACGCCGCTGCCATCGTTTCAAAGAGACGACCTCGCCTAGTCGCGGGTTCCTTTGACCCTTGCTCGCTTTCTATTCTGTCCGTGAAGGGAAATGGTGAGGCTCACTGCTGACTTGATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGATCGCGAGTTAGATCTTCGAGGCAACAAAATAGCCGTAATCGAAAACCTAGGTGCTACTGAGGACCAATTTGACACCATAGATTTGTCTGACAATGAGATTGTCAAATTGGAGAACTTACCATATCTTAACCGGCTGGGTACACTACTCATCAATAACAATAGAATTACTAGAATTAATCATAACATTGGAGAGTTCTTACCAAAATTGCACACACTAGTTCTCACAAACAACAGGATTGTAAACTTAGTAGAAATTGATCCTTTAGCATCCCTTACAAAGCTGCAATTCCTAAGTCTGCTAGACAACAATATTACAAAGAAAGCGAATTACAGGCTTTATGTTATTAACAAGCTGAAGTCCCTCCGGGTTTTGGATTTCAAGAAAGTGAAAAATAAGGAACGTTTAGAAGCCAAAAATTTGTTTGCTTCAGAAGAAGTTATAGAAGAAGTTCAAAGGACACCAGTGAACACGATTTCACCTGGTGAAACTGCAAATGTTTCGGAAGCTGCGGAGGAACTTCAGACACCCAAAGTGGCTGCTCCTACTCCCGAGCAAATTATTGCTATCAAGGCTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGGCACTGAAGTCTGGCCAACTTCCTGCAGATTTGAAAAGCATGAATGATAATATAACNTTGGATAATGTTAATGAAAAACACGAAGACATGGTTCATGGTGAATCTAATGATACACGCGATCAGATAAATAATGATTCTACTCTGATGGAACAGATTGATGATTTTGGATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	272568	277196	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010606.1	PF14580.1	LRR_9	1	164	7.70E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.205
SRR1783600	control	54.062
SRR1783602	moderate drought stress	45.638
SRR1811619	moderate drought stress	45.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.680
DRR006520	Root Summer glycyrrhizin high producing strain	65.731
DRR006521	Root Winter glycyrrhizin high producing strain	57.584
DRR006522	Root Winter glycyrrhizin high producing strain	55.563
DRR006523	Root Summer glycyrrhizin low producing strain	58.646
DRR006524	Root Summer glycyrrhizin low producing strain	58.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.896
SRR2868004	Drought Stress (root)	53.194
SRR2967015	Control (root)	46.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.283
SRR9715740	Leaf	35.149
SRR9715741	Leaf	38.315
SRR9715739	Root	7.532
SRR9715742	Root	34.273
SRR9715743	Root	28.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	171.426
SRR8749028	MeJA induced 9h	125.993
SRR8749029	MeJA induced 9h	129.694
SRR8749030	Uninduced	94.537
SRR8749031	Uninduced	75.863
SRR8749032	Uninduced	73.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.516
SRR8400027	Control - Root	51.555