Gene detail

Gene detail information of Glyur000166s00010602.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33550.1	7.00E-83	Homeodomain-like superfamily protein
NR	XP_003536818.1	1.80E-173	PREDICTED: uncharacterized protein LOC100797767 [Glycine max]
Swissprot	tr\|Q39117\|TGT2_ARATH	9.00E-06	Trihelix transcription factor GT-2
trEMBL	tr\|I1LFM1\|I1LFM1_SOYBN	7.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G44620.1}

Sequence

Transcript Sequence

>Glyur000166s00010602.1
GGTGGTTAAGGGTCAATAAGCTGTTTAGTGCATAATACAGCCAGTAAAATCACAAAAGCCACGTTTGTCAAAAAAAAATAAAAATCACAAAAGCCACAACCCCCTTCCTCCATTTCTGTGCTTCTTCTCTCTCCTCTTTACGAAGAAGAGAAAGATGAGCTGACTCTCCCTCCCTTCCTCCCTCCTAAACGGCGTAACGGACATCGCTCAACTGGATGGCTTTGGAGCAGCAATCACCACCACAGCCTCAGAACAGCTCAGTTGCAGACGGGAACAGTAACGGCGGAGAGGACGGAGGCAAAGCTCCGAGACTGCCTCGGTGGACAAGACAAGAGATTCTGGTTCTGATTCAGGGGAAGAGGGATGCAGAGAACAAGTTCAGGAGGGGCCGGAACGCGGGATTGCCATTCGGGTCGGGTCAGGTGGAACCAAAATGGGCATCAGTATCTTCGTACTGCAGAAAACACGGAGTGAACCGTGGTCCGGTTCAATGCCGGAAGAGGTGGAGCAATCTGGCTGGAGACTACAAGAAGATCAAAGAGTGGGAGTCGCATATAAGGGAGGAGACGGAATCGTTTTGGGTCATGAGAAATGATTTGAGGAGGGAAAGAAAATTACCCGGATTTTTTGACAAGGAGGTTTATGATATTCTTGATTCAGGGTCGGCGCCACAGTTGGCTCTGTCTCTGTCATCGCCGACAGCAGCACCCGTATCAGTCTCAGTATCAACGGAGGAGCCCTTGATGCCTGCCGGTGCCAAGGGCACTGAGGAGGAGCCACACTTATTATATGACAGTAATCGGAGCGCGGCCGGTGAGGACGGCTTGTTCTCAGATTTTGAGCCAGAAGAAGTGGAAGTGGATGCCAGTCCTATTCCTGAAAAGAAGGATCCCCCAAACCCCAAGGACATTCCTGCACCGGCTATTCCTATCTCAGAGAAGCAATATCAACCACTCCTCCGTGGCTGCCAAGCTCAAGGTGTGACTAACGAGAAACAGCCAACTTCAAATCCAGAAATGGGTTCTACATCTCAAGGAGAACGGAAAAGGAAGCGGTTAGCAACAGATGGGGAGGAGGAAACTTTGCAATATCAATTAATTNATGTCTTAGAAAGAAATGGCAAAATGCTAAGCGCTCAACTGGAAGTGCAGAATATAAATTTCCAGTTGGATCGCGAGCAACGGAAAGACCACGCAAGTAACTTGGTTGCTGTTCTCGACAAGCTTGCAGATGCTCTAGGGAGAATCGCTGATAAATTGTAGTGCAAGAGTAATCAGAATACAGTACTGTACATAACAGTTGGAGTCCTGTAGATAATAGTGGTTTCTGTCATTTATCTCGGGATGGCTTCTAAAAGATGACCGTCACATTTGTTCCCCTTTTGTCGTCCTTTCTGTATGCCATATTTTTGTGGTTTATTTATTACTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	255447	258274	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix
EAR motif-containing Proteins	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010602.1	PF13837.1	Myb_DNA-bind_4	34	124	7.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.558
SRR1783600	control	11.857
SRR1783602	moderate drought stress	17.865
SRR1811619	moderate drought stress	17.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.458
DRR006520	Root Summer glycyrrhizin high producing strain	16.067
DRR006521	Root Winter glycyrrhizin high producing strain	22.266
DRR006522	Root Winter glycyrrhizin high producing strain	21.908
DRR006523	Root Summer glycyrrhizin low producing strain	22.142
DRR006524	Root Summer glycyrrhizin low producing strain	22.098
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.254
SRR2868004	Drought Stress (root)	17.168
SRR2967015	Control (root)	20.914

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.056
SRR9715740	Leaf	14.323
SRR9715741	Leaf	15.933
SRR9715739	Root	10.555
SRR9715742	Root	11.922
SRR9715743	Root	12.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.190
SRR8749028	MeJA induced 9h	16.383
SRR8749029	MeJA induced 9h	13.815
SRR8749030	Uninduced	5.084
SRR8749031	Uninduced	2.500
SRR8749032	Uninduced	3.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.514
SRR8400027	Control - Root	18.031